Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02903 ATGAAGAGATCCGTTTTGGGGTCTTGCAAAGCTGAAGTTGAATCAGTGGTGGATGACGAAACCCCTTCCCCAAAAATGAGTACGTGTAATATCTGCTTCAGGAGTTTTGGCTGCGGCAAGGCTTTAGGTGGCCACAGAAGATCCCACTTTATGAAGCAGCAAAAGAAGGTAAAGAACCGTTCAACTGATAATCACTCATCAAAACCTGGTGATGATAACATTAGGGCTATCTGTGATTTTGATGATGTTGATGGCAAACACATTTGTTGTATTTGCAAGAAGGAATTTCCTACCAAGAATGCTTTGTTTGGGCACATGAGATCTCATCCTGAGAGACCATGGAGGGGTGTGTCCCCTCCTACTCAGAAGCACTCATCTTCTCCTTCTTCTTCTTACTACTATTCTTCTTCTTCTTCACTCAATTCTGATTCTATGGAGAAAAACAAGGAGGACCGTGATGTTGACGATGGTTGCGATGGGGGTGAGAGGGTTATTGCACCTGATGAACATCGCACAAATCTCGTCGATCTTTTGATGTGTACCTCACCCAGCTGGGTTAATAAAGATACAAGAGGCAGAAGTTCGATTGGTGGGTATCAAGCAGCTGAAACTCTTTTTTACATGAGTTCTTATTCTAAGTACTTTTGTAGTGAGCCTAATAGGGTTTTCCCCAAGAAGGATGATGTGCTCCCAAAGAGTGCCCCAGCCCTAATCAAGCAGCGCAAAAGAAAGATTTTTGAACCTTCGTCAAGTAAGAAAGATAAGGTGAAGAAGATAAAACTTCTCTTTAAAGGTGAATTGAAGTTAGGAAACAAATCTAATGGGGCTAGTGAATGTGATGGTGAGGGTAATGAGATGAACAGATCGAAGGGTTTATCTGACTCTGGGGTTGAGTATAACCATGATGAGAAGAAGGGTATGGATGAGGATTTTGATGATGTGAATGCTAAATTGGTTACCCCAACTAGGGTGCAAGATCATGTTGGTCCTTCTGATGTGAAGAAGAATGTGGATAAGAAAGGGAAAAACAGTAAGAAACTGGTACTGACTGCGAGGGCAAAGGAATCGGAATCTGACAAAGCGAGTCAAGAGAAAGCAGATTGGTATAAATGTGCTGCATGTGGGAAAAGCTTCAAAACTTTCCAAGGCCTAGGAGGACACAGGTCAGTCCACAAAGAGAAGAACATTGTAAGCATTGATGAGCCAAACCCCTCGGAAGCTGTTGCTGAACAAAACAACTCTAGCAGCTCCAGTAACATGCACAAGATGGAGGAGCCATTATTCAATGAAGCAAGCTTAGCAGATCATCAGCCATGCCAATCTTCAGGTGTCAAGAAACTGAATTTCGATCTGAATGAGCTGCCTTATGCTATGGAGGAGGACTAA 1386 0.4278 MKRSVLGSCKAEVESVVDDETPSPKMSTCNICFRSFGCGKALGGHRRSHFMKQQKKVKNRSTDNHSSKPGDDNIRAICDFDDVDGKHICCICKKEFPTKNALFGHMRSHPERPWRGVSPPTQKHSSSPSSSYYYSSSSSLNSDSMEKNKEDRDVDDGCDGGERVIAPDEHRTNLVDLLMCTSPSWVNKDTRGRSSIGGYQAAETLFYMSSYSKYFCSEPNRVFPKKDDVLPKSAPALIKQRKRKIFEPSSSKKDKVKKIKLLFKGELKLGNKSNGASECDGEGNEMNRSKGLSDSGVEYNHDEKKGMDEDFDDVNAKLVTPTRVQDHVGPSDVKKNVDKKGKNSKKLVLTARAKESESDKASQEKADWYKCAACGKSFKTFQGLGGHRSVHKEKNIVSIDEPNPSEAVAEQNNSSSSSNMHKMEEPLFNEASLADHQPCQSSGVKKLNFDLNELPYAMEED* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02903 461 Gene3D Classic Zinc Finger 314 395 - -
Lapu6g02903 461 MobiDBLite consensus disorder prediction 51 71 - -
Lapu6g02903 461 MobiDBLite consensus disorder prediction 119 143 - -
Lapu6g02903 461 Pfam C2H2-type zinc finger 87 111 - -
Lapu6g02903 461 Pfam C2H2-type zinc finger 369 393 - -
Lapu6g02903 461 Pfam C2H2-type zinc finger 29 49 - -
Lapu6g02903 461 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 54 IPR013087 -
Lapu6g02903 461 MobiDBLite consensus disorder prediction 56 71 - -
Lapu6g02903 461 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 109 IPR013087 -
Lapu6g02903 461 ProSitePatterns Zinc finger C2H2 type domain signature. 29 49 IPR013087 -
Lapu6g02903 461 SMART c2h2final6 369 391 IPR013087 -
Lapu6g02903 461 SMART c2h2final6 27 49 IPR013087 -
Lapu6g02903 461 SMART c2h2final6 87 109 IPR013087 -
Lapu6g02903 461 SUPERFAMILY beta-beta-alpha zinc fingers 86 111 IPR036236 -
Lapu6g02903 461 MobiDBLite consensus disorder prediction 144 163 - -
Lapu6g02903 461 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Lapu6g02903 461 ProSiteProfiles Zinc finger C2H2 type domain profile. 369 396 IPR013087 -
Lapu6g02903 461 MobiDBLite consensus disorder prediction 326 365 - -
Lapu6g02903 461 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 23 460 IPR044653 GO:0003700
Lapu6g02903 461 MobiDBLite consensus disorder prediction 273 295 - -
Lapu6g02903 461 ProSitePatterns Zinc finger C2H2 type domain signature. 371 391 IPR013087 -
Lapu6g02903 461 MobiDBLite consensus disorder prediction 396 443 - -
Lapu6g02903 461 MobiDBLite consensus disorder prediction 405 423 - -
Lapu6g02903 461 MobiDBLite consensus disorder prediction 103 163 - -
Lapu6g02903 461 Gene3D Classic Zinc Finger 27 109 - -
Lapu6g02903 461 MobiDBLite consensus disorder prediction 328 365 - -
Lapu6g02903 461 SUPERFAMILY beta-beta-alpha zinc fingers 367 395 IPR036236 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02903 29 120 C2H2 Transcription Factor Family AT2G26940 39.216 1.45e-14 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu6g02903 zf-C2H2_6 6.7e-07 CL0361