Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02901 ATGAGTATTGTGACTAGTGGGGGTGATAATCAGAAGACATTCAGAGGCCGTCCATCATCATCAGATGAAGAAGATGGAGTTGGAGGTAACATGGGAGGAGAAGTTCCTCTAAAGAAAGGCCCGTGGACTGCAGCAGAGGATGCAATTTTGTTAGACTATGTCAATAAGCATGGACAAGGCAATTGGAATGCAGTTCAAAAGTATTCAGGACTTGCCCGGTGTGGGAAAAGCTGCCGTCTACGGTGGGCGAATCACTTGAGACCAGATCTGAAAAAAGGTGCATTTACCAAAGAGGAAGAAAATCGAATCCTTGAGCTCCATGCAAAGATGGGGAACAAATGGGCTCGGATGGCTGCTGAGTTGCCTGGACGTACGGATAATGAAATCAAGAACTACTGGAATACAAGAATCAAAAGAATGCAACGAGCTGGCTTACCAATCTACCCTCCAGAATTATGCGAACGGATACTTAATGGAAATCAAGGAAGTCAAAATACTGGTCCCTTGACTATTGAAGCCTCCCAACATGATAATCTCTCCCAACCGGACAATCTTGATATGCCAGATGCAGATTTTAAAACTATCAAATTCCATCATGGTCCCTCACAGGTACCATCAATTTTTGATATACCTGAAAACTTGTTTGAGCAAAGTTCGGACTCATCTCATTTGTTTCCAATGTATCCTTCAAAACGTCTTCGGGGATCAGAAATTCTATACAATAGTTTTGGTAGTTGTACAAGTAATGCTCACCCAATATTTGATCAGTATGACAATTATACTGGTGAGAAAATTTATGACCATCCTAAATTCTCTAATCCTTTTGGTCCCATTCTTAACACCACCAATCAGTTTCATGGTGATAACATAAATGGCAGCCATGTCATGTTAAATGGCAATGTTTCTTCTTCTGTGCCTGTATTTGAGGCTAGGAAGTTGGAGCTCCCTTCACTCCAATATGCAGAAACTCAATATGGTAGCTGGGTCACGCATGGGTCCCCGCTTCCTTCACTTGAGTCTGTAGATACATTGATTCAATCTCCTCCAGTTGAGTCTATTCCACCAGATCTCCTTTCTCCACAAAGCAGTGGTTTGCTGGAAGCAATAGTCTACAACTTGAAGAGCTCGAAACACTCAAACACTGATTTATTTTTGCCAGTGATAACTAGTACAACCAACGAAGCAGCTGGGAGTTCAACCTTGAATCATCCCTTTAAGACAGAATGGGATGAGCAAGGGGAGTCAAACTCGCCCTTAGGCCAATCTACTGCTTCAGTTATGACTGACTATACTCCTATAAGCTCAGTAGATGGACCCCAATCAATTGAAACCACTCAAGATCAAGACGATAAGTTCGAAGCTCTCATCCAATTTCCAGATAGTTACAGGAGTAAAGGAAAATCAGAACAGATTAATTTTTCGCAACGTCCTGATGCTTTATTTGACTTAGCTTGGTTCGGAAATAACACAGAATATGGAATTAGTCAATCTGATCTTAAAGATGCTCTAAGTGCACTTCTTGGTGAAGATTACAAAGATAAGCTTGGTGAAGATGGCAAGGGTAAGCACTAA 1572 0.416 MSIVTSGGDNQKTFRGRPSSSDEEDGVGGNMGGEVPLKKGPWTAAEDAILLDYVNKHGQGNWNAVQKYSGLARCGKSCRLRWANHLRPDLKKGAFTKEEENRILELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRMQRAGLPIYPPELCERILNGNQGSQNTGPLTIEASQHDNLSQPDNLDMPDADFKTIKFHHGPSQVPSIFDIPENLFEQSSDSSHLFPMYPSKRLRGSEILYNSFGSCTSNAHPIFDQYDNYTGEKIYDHPKFSNPFGPILNTTNQFHGDNINGSHVMLNGNVSSSVPVFEARKLELPSLQYAETQYGSWVTHGSPLPSLESVDTLIQSPPVESIPPDLLSPQSSGLLEAIVYNLKSSKHSNTDLFLPVITSTTNEAAGSSTLNHPFKTEWDEQGESNSPLGQSTASVMTDYTPISSVDGPQSIETTQDQDDKFEALIQFPDSYRSKGKSEQINFSQRPDALFDLAWFGNNTEYGISQSDLKDALSALLGEDYKDKLGEDGKGKH* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02901 523 MobiDBLite consensus disorder prediction 1 15 - -
Lapu6g02901 523 ProSiteProfiles Myb-like domain profile. 87 137 IPR001005 -
Lapu6g02901 523 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 19 501 - -
Lapu6g02901 523 MobiDBLite consensus disorder prediction 1 39 - -
Lapu6g02901 523 SUPERFAMILY Homeodomain-like 36 133 IPR009057 -
Lapu6g02901 523 ProSiteProfiles Myb-like domain profile. 34 86 IPR001005 -
Lapu6g02901 523 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 86 IPR017930 -
Lapu6g02901 523 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 141 IPR017930 -
Lapu6g02901 523 Pfam Myb-like DNA-binding domain 39 86 IPR001005 -
Lapu6g02901 523 Pfam Myb-like DNA-binding domain 92 135 IPR001005 -
Lapu6g02901 523 SMART sant 38 88 IPR001005 -
Lapu6g02901 523 SMART sant 91 139 IPR001005 -
Lapu6g02901 523 Gene3D - 38 91 - -
Lapu6g02901 523 FunFam MYB-related transcription factor 38 91 - -
Lapu6g02901 523 FunFam Transcription factor GAMYB 94 140 - -
Lapu6g02901 523 MobiDBLite consensus disorder prediction 395 424 - -
Lapu6g02901 523 Gene3D - 94 165 - -
Lapu6g02901 523 CDD SANT 41 86 IPR001005 -
Lapu6g02901 523 CDD SANT 94 135 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02901 Lapu-Chr6 34226050 34233146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02901 37 510 MYB Transcription Factor Family AT5G06100 38.370 9.97e-91 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu6g02901 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02901 K09422 - gmx:100818609 718.768