Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02898 ATGGGAAATACTTGTGCGAAAGGAAAACCTATTGCTCATGTATCTTCCTCCAATTTTTCTGGAAGTAAGAGGCCTGCAAGTAAGCCAAAGCAGTATTCAAATTCTTCTGTACAAAATCCTGCTCCAAAAACTTCAGAATCAAATGTTAGTGCATCCATCTCCAGTAACCTTAAGTCCTTCAGCTTGAATGATCTAAAGGAGTCCACTAAGAACTTCAGGCGAGAAAATATAATCGGAGAGGGAGGATTTGGGCGTGTCTTCAAAGGATGGATTGATGAGAACACGTATGGTCCCACAAGACCAGGCACTGGAATTGTGGTGGCCATTAAAAATCTTAAGCCAGAAAGCTTCCAAGGGCACAAAGAATGGCTTGTATGTGCAGAAGTCAATTATCTTGGGCAGCTTCAGCATGAGAATTTGGTGAAACTTATTGGTTATTGCTTGGAAGGTAAAAACAGGCTTCTGGTTTATGAGTTCATGCAAAAAGGAAGTTTGGAGAATCATTTGTTCAGAAAAGGTGTTCAACCTATGGCTTGGGTTACAAGGGTCAACATTGCAATTGGTGTAGCCAGAGGACTAACATTCTTGCATTCCCTGGATCAAAATGTCATCTTTCGTGATTTAAAGGCTTCCAATATCCTACTTGATTCTGACTTCAATGCAAAGCTTTCAGATTTTGGCTTGGCAAGGGATGGTCCAACTGGAGATAATACTCATGTTTCAACTAGAGTTATAGGAACTCAAGGCTATGCTGCACCGGAGTATGTTGCTACTGGTCACCTGACCCCAAGGAGTGATGTATATAGCTTTGGTGTAGTCTTGTTAGAATTGCTTACAGGTAGGCGTGCAGTAGAAGATGAGAGACCTGGATTTTCAGAGGAAACCTTGGTGGATTGGGCAAAGCCATTTTTGAGTGACAACAGAAGAGTTTTGAGAATAATGGACACAAGATTGGGGGGTCAATACTCCAAGAAAGGAGCACAAGCTGCAGCTGCACTTGCACTGCAATGCCTCAACACTGACCCCAAATTTAGACCCCCTATGGTGGAAGTTCTAGCAACATTGGAAGGACTTAATTCCTCAAACTCATTCACAAGGACACCACCAAGACCTGAGAGCCATGCAACCAAAAGTTCTGATGGCCATTCACAAAATTAA 1158 0.424 MGNTCAKGKPIAHVSSSNFSGSKRPASKPKQYSNSSVQNPAPKTSESNVSASISSNLKSFSLNDLKESTKNFRRENIIGEGGFGRVFKGWIDENTYGPTRPGTGIVVAIKNLKPESFQGHKEWLVCAEVNYLGQLQHENLVKLIGYCLEGKNRLLVYEFMQKGSLENHLFRKGVQPMAWVTRVNIAIGVARGLTFLHSLDQNVIFRDLKASNILLDSDFNAKLSDFGLARDGPTGDNTHVSTRVIGTQGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGRRAVEDERPGFSEETLVDWAKPFLSDNRRVLRIMDTRLGGQYSKKGAQAAAALALQCLNTDPKFRPPMVEVLATLEGLNSSNSFTRTPPRPESHATKSSDGHSQN* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02898 385 PANTHER OS01G0588500 PROTEIN-RELATED 39 358 - -
Lapu6g02898 385 SUPERFAMILY Protein kinase-like (PK-like) 46 362 IPR011009 -
Lapu6g02898 385 ProSiteProfiles Protein kinase domain profile. 72 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g02898 385 ProSitePatterns Protein kinases ATP-binding region signature. 78 110 IPR017441 GO:0005524
Lapu6g02898 385 FunFam Serine/threonine-protein kinase BIK1 39 159 - -
Lapu6g02898 385 Gene3D Transferase(Phosphotransferase) domain 1 160 376 - -
Lapu6g02898 385 MobiDBLite consensus disorder prediction 1 49 - -
Lapu6g02898 385 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 160 368 - -
Lapu6g02898 385 MobiDBLite consensus disorder prediction 360 385 - -
Lapu6g02898 385 SMART serkin_6 72 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g02898 385 MobiDBLite consensus disorder prediction 10 49 - -
Lapu6g02898 385 Gene3D Phosphorylase Kinase; domain 1 46 159 - -
Lapu6g02898 385 Pfam Protein tyrosine and serine/threonine kinase 75 354 IPR001245 GO:0004672|GO:0006468
Lapu6g02898 385 CDD STKc_IRAK 78 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02898 Lapu-Chr6 34096778 34100730 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02898 29 355 Glycoside Hydrolase AT3G07070 48.182 1.05e-98 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lapu6g02898 PK_Tyr_Ser-Thr 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02898 - - vum:124843429 686.411