Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02897 ATGAATGGGCAAAAGATTAAGCGCCGAGTGGGTAAATATGAGGTAGGGAGGACCATTGGGGAGGGGACATTTGCAAAGGTGAAATTTGCTAGGAACTCTGAGACTGGGGAGCCTGTGGCTCTTAAGATTCTTGACAAGGAGAAAGTTCTCAAGTATATGCTGGTTGAGCAGATCCAGCGAGAAATAGCCACAATGAAGTTGATCAAGCATCCGAATGTTGTTCAACTTTGTGAGGTCATGGGGAGCAAGACAAAAATATACATAATTTTAGAGTTTGTGACTGGGGGAGAGCTTTTTCATAAAATTTTAAACAATGGACGGATGAGTGAAAAGGAAGCACGCAGATATTTCCAGCAGCTTATAAATGCTGTTGACTATTGTCATAGCAGGGGTGTCTACCACAGAGACCTGAAACTAGAGAACTTACTATTAGATGCTTCTGGGAACCTTAAAATTTCTGATTTTGGATTCAGTGCACTTTCCGAACAAGTCAGGGATGATGGACTGCTCCATACAACATGTGGAACTCCAAATTATGTTGCTCCTGAGGTCCTTAAGGATGGAGGCTATGATGGAGCAGCTGCAGATTTGTGGTCATGTGGTGTGATTCTCTTTGTATTGCTTGCAGGTTACTTGCCTTTTGATGACACTAATCTTCTGAACCTGTATAAAAAGATTTCAGCTGCTGAATTTACTTGCCCCCCTTGGCTTTCTTTTAGTGCCAGGAAATTGATAACTAGAATCTTGAATCCCAACCCCGTGACTCGTATCACTGTACCCGAGATTCTGCGTGATGAATGGTTTAAAAAAGACTATAAACTTCCAGTTTTTGAGGAGACAAAGGAGAGCAACACTGATGACATTGAGACCATCTTTAAAGACTATGAAGTGCACAATGTAAGAGAGAAGGAAGATCAGCCAACACCTATGAATGCATTTGAATTGATATCCCTTTCCAAGGGGCTGAACCTAGAAAACTTGTTTGACATAGACCAGGGATTTAAAAGGGAAATAAGGTTCACATCAAAATGCCCGGCCAATGAGATACTCAGCAAGATTGAAGAAGCTGCAAAACCTCTTGGTTTTGACGTGCAGAAGAAAAATTTCAAGATGAAGCTTAAAAATGTGAAAGCTGGAAGGAAGGGAAACCTCAATGTTGCCACACAGATATTTCAAGTGGCTCCTTCTCTTCACGTGGTTAAGATTAATAAAGCAAAAGGTGATACATTGGAGTTCCTTAAGTTCTACAACAAGCTTTCAACATGTTTGGAGGATGTTGTTTGGAAAACTGAAGATGACATGGAAGATACAAAGTGA 1317 0.4093 MNGQKIKRRVGKYEVGRTIGEGTFAKVKFARNSETGEPVALKILDKEKVLKYMLVEQIQREIATMKLIKHPNVVQLCEVMGSKTKIYIILEFVTGGELFHKILNNGRMSEKEARRYFQQLINAVDYCHSRGVYHRDLKLENLLLDASGNLKISDFGFSALSEQVRDDGLLHTTCGTPNYVAPEVLKDGGYDGAAADLWSCGVILFVLLAGYLPFDDTNLLNLYKKISAAEFTCPPWLSFSARKLITRILNPNPVTRITVPEILRDEWFKKDYKLPVFEETKESNTDDIETIFKDYEVHNVREKEDQPTPMNAFELISLSKGLNLENLFDIDQGFKREIRFTSKCPANEILSKIEEAAKPLGFDVQKKNFKMKLKNVKAGRKGNLNVATQIFQVAPSLHVVKINKAKGDTLEFLKFYNKLSTCLEDVVWKTEDDMEDTK* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02897 438 SMART serkin_6 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g02897 438 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 414 - -
Lapu6g02897 438 CDD CIPK_C 311 420 - -
Lapu6g02897 438 ProSiteProfiles Protein kinase domain profile. 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g02897 438 Pfam NAF domain 307 366 IPR004041 GO:0007165
Lapu6g02897 438 ProSiteProfiles NAF domain profile. 305 329 IPR018451 GO:0007165
Lapu6g02897 438 FunFam Non-specific serine/threonine protein kinase 304 429 - -
Lapu6g02897 438 CDD STKc_SnRK3 12 267 - -
Lapu6g02897 438 FunFam Non-specific serine/threonine protein kinase 6 308 - -
Lapu6g02897 438 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Lapu6g02897 438 FunFam Non-specific serine/threonine protein kinase 4 92 - -
Lapu6g02897 438 Gene3D Transferase(Phosphotransferase) domain 1 93 275 - -
Lapu6g02897 438 Gene3D Kinase associated domain 1, KA1 304 429 - -
Lapu6g02897 438 Gene3D Phosphorylase Kinase; domain 1 3 92 - -
Lapu6g02897 438 SUPERFAMILY Protein kinase-like (PK-like) 9 284 IPR011009 -
Lapu6g02897 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Lapu6g02897 438 Pfam Protein kinase domain 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02897 Lapu-Chr6 34016440 34023451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02897 4 390 CBL-interacting serine-threonine protein kinases AT2G26980 79.124 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lapu6g02897 Pkinase 7.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02897 - - rcu:8279866 740.339