Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02886 ATGGATTCATTTGAGCCAGATGGAAATGGGAAGGAGGAGTCACTTCCACCACCACCTCCTGTACCTTCAAATGTTGTACCTCTCAAAGTTGAAGAAGTTCTCTCTCATGCAGAACCTGTTAAGAAAAAGGTGTCTCGACTTCCAATTGCTAGACGAGGTGTGGGGTCGAGGGGAATGAAAATACAACTACTAACCAATCACTTCAAAGTTAATGTCACTAAAAATGAGGGACATTTCTTCCATTACAGTGTGGCTTTTACCTATGAAGATGGACGCCCTGTAGAAGGTAAGGGTGTAGGGAGAAAGATAATGGACAGGGTACAGGAAACATACTATTCTGACTTAAATGGTAAGGACTTTGCATATGATGGAGAGAAAAGTTTGTTTACTCTTGGCTCGCTTCCTCGAAACAAGCTTGAATTTGAAGTTGTTCTAGAGGAAGTCACCTCTAACAGGAACAATGGAAATTGCAGCCCTGATGTCAATGGGGACAATGAGAGTGACAGAAAGAGAATGCGACGACCATACCATGCAAAGTCATACAAAGTAGAGATAAGCTATGCTGCAAAAATTCCAATGCAGGCCATCTCCAATGCCTTACGTGGGCAGGAGACAGATAATTTTCAAGAAGCTGTTAGAGTTCTTGATATAATTTTGAGGCAGCATGCTGCTAAGCAAGGGTGCTTGCTTGTACGCCAATCATTTTTCCACAATGATCCGAACAATTTTGCAGAAGTAGGAGGTGGTGTTCTTGGTTGTAGAGGATTCCATTCAAGTTTTAGAGCTACACAGAGTGGCCTGTCTCTCAACATAGATGTTTCAACTACCATGATAATTCAACCTGGACCTCTGGTGAATTTCTTAATTTCCAATCAAAATGTCAGAGATCCTTTTCAACTTGACTGGGCCAAGGCTAAAAGGACATTAAAGAATCTGAGGATTAAAACCAAGCCATCCAATCAAGAATTCAAAATCAATGGGATCAGTGAACTCCCATGCCGAGAGCAGACTTTTACTTTGAAGGTTAGAGGTGGAGGCGATGGTGGAGATGGTACTGAGGAAGTCACTGTTTATGATTATTTTGTCAATGTACGGAAGATAGATTTGCAATACTCTGGTGATCTTCCATGCATTAATGTTGGCAAGCCAAAACGGCCTACATATTTTCCCGTTGAGCTTTGTGAATTGGTTTCATTGCAACGATATACAAAAGCTCTGTCCACTCTTCAAAGGGCTTCATTAGTGGAGAAGTCCCGGCAGAAGCCCCAAGAAAGGATGAAAATTTTGTCTGATGCACTTAGAAGCAGCAACTATGGGTCTGAACCTTTGCTCCGTAATTGTGGTATCTCTATAAGCACTGGCTTCACTGAAGTGGAGGGTCGTGTTTTGCCTGCACCAAGGCTGAAGTTTGGTAATGGTGAGGACATCAACCCGAGGAATGGGAGATGGAATGTTAGCAACAAGAGTTTTGTGCAGCCGTCTAAGGTAGAAAGATGGGCTGTTGCTAACTTTTCGGCACGCTGTGATGTACGAGGACTTGTGCGTGATCTGATTAGAATAGGGGATTCGAAAGGAATTTTGATAGAGCAACCATTTGACGTGTTTGATGAGAATCCTCAGTTTAGGCGTGCCCCACCCATGGTTAGGGTGGAGAAGATGTTTGAAACCATCCAGTCTAAACTTCCTGGGGCTCCTAAGTTCCTTCTGTGTTTGCTTCCTGATAGGAAAAATTGTGATATTTATGGTCCGTGGAAAAAGAAGAATCTTGCTGATTTTGGAATAATTAATCAGTGTATGTGCCCTTCAAGGGTCAACGATCAGTACCTTACCAATGTTATGTTGAAGATCAATGCTAAGCTGGGTGGATTGAATTCATTGCTAGGTGTTGAACATTCTCCTTCTCTTCCCATTGTTTCCAAAGCTCCTACGCTCATTCTGGGCATGGATGTCTCACATGGCTCTCCTGGGCAGACTGATATTCCTTCTATTGCTGCGGTGGTCAGCTCTAGGCACTGGCCTCTGATATCAAAGTATAGGGCTTGTGTTCGCACCCAGTCTGCAAAGGTTGAAATGATAGATAATTTGTTCAAGCAAGTGTCTGAAAAACAAGACGAAGGCATCATGAGGGAACTTTTGCTTGATTTCTATTCAACTTCTGGGAGGAGAAAACCGGAAAATATTATCATATTCAGGGATGGAGTTAGTGAGTCACAGTTCAATCAGGTTTTGAATATTGAACTTGAACGCATCATTGAGGCTTGTAAATTTCTTGATGAAAATTGGGAGCCGAAGTTTATGGTAATAGTTGCTCAGAAGAATCACCACACAAGATTTTTCCAGCCGGGCTCTCCTGACAATGTCCCTCCTGGTACTGTTATCGACAATAAAATTTGTCATCCGAGAAATTATGATTTCTACCTTTGTGCTCATGCTGGAATGATAGGAACTAGTAGACCTACCCATTACCATGTGCTGCTTGATGAGATTGGTTTCTCTCCTGATCAGCTGCAGGAGCTTGTCCATTCATTATCATACGTGTATCAGAGGAGCACTACTGCCATTTCTGTTGTTGCCCCAATATGCTATGCACACTTGGCTGCCTCTCAGCTGGGGCATTTCATGAAGTTTGAGGACAAATCTGAGACAACTTCAAGCCATGGTGGAGCGAGTGGTGCTGGTGCAGTTCCCATCCCTCAGATGCCTCCATTGCAGGAAAATGTGCGCAACACAATGTTCTTTTGTTGA 2745 0.4299 MDSFEPDGNGKEESLPPPPPVPSNVVPLKVEEVLSHAEPVKKKVSRLPIARRGVGSRGMKIQLLTNHFKVNVTKNEGHFFHYSVAFTYEDGRPVEGKGVGRKIMDRVQETYYSDLNGKDFAYDGEKSLFTLGSLPRNKLEFEVVLEEVTSNRNNGNCSPDVNGDNESDRKRMRRPYHAKSYKVEISYAAKIPMQAISNALRGQETDNFQEAVRVLDIILRQHAAKQGCLLVRQSFFHNDPNNFAEVGGGVLGCRGFHSSFRATQSGLSLNIDVSTTMIIQPGPLVNFLISNQNVRDPFQLDWAKAKRTLKNLRIKTKPSNQEFKINGISELPCREQTFTLKVRGGGDGGDGTEEVTVYDYFVNVRKIDLQYSGDLPCINVGKPKRPTYFPVELCELVSLQRYTKALSTLQRASLVEKSRQKPQERMKILSDALRSSNYGSEPLLRNCGISISTGFTEVEGRVLPAPRLKFGNGEDINPRNGRWNVSNKSFVQPSKVERWAVANFSARCDVRGLVRDLIRIGDSKGILIEQPFDVFDENPQFRRAPPMVRVEKMFETIQSKLPGAPKFLLCLLPDRKNCDIYGPWKKKNLADFGIINQCMCPSRVNDQYLTNVMLKINAKLGGLNSLLGVEHSPSLPIVSKAPTLILGMDVSHGSPGQTDIPSIAAVVSSRHWPLISKYRACVRTQSAKVEMIDNLFKQVSEKQDEGIMRELLLDFYSTSGRRKPENIIIFRDGVSESQFNQVLNIELERIIEACKFLDENWEPKFMVIVAQKNHHTRFFQPGSPDNVPPGTVIDNKICHPRNYDFYLCAHAGMIGTSRPTHYHVLLDEIGFSPDQLQELVHSLSYVYQRSTTAISVVAPICYAHLAASQLGHFMKFEDKSETTSSHGGASGAGAVPIPQMPPLQENVRNTMFFC* 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02886 914 CDD PAZ_argonaute_like 281 397 - -
Lapu6g02886 914 Pfam N-terminal domain of argonaute 60 219 IPR032474 -
Lapu6g02886 914 FunFam Protein argonaute 3 635 914 - -
Lapu6g02886 914 ProSiteProfiles PAZ domain profile. 306 398 IPR003100 GO:0005515
Lapu6g02886 914 SMART DUF1785_2 229 281 IPR014811 -
Lapu6g02886 914 Pfam Argonaute linker 1 domain 231 279 IPR014811 -
Lapu6g02886 914 CDD Piwi_ago-like 442 867 IPR045246 -
Lapu6g02886 914 MobiDBLite consensus disorder prediction 881 900 - -
Lapu6g02886 914 Gene3D - 462 628 - -
Lapu6g02886 914 SMART Piwi_a_2 567 875 IPR003165 GO:0003676
Lapu6g02886 914 Gene3D paz domain 275 402 - -
Lapu6g02886 914 SUPERFAMILY Ribonuclease H-like 551 873 IPR012337 -
Lapu6g02886 914 Pfam PAZ domain 286 414 IPR003100 GO:0005515
Lapu6g02886 914 MobiDBLite consensus disorder prediction 1 24 - -
Lapu6g02886 914 Gene3D - 634 914 IPR036397 GO:0003676
Lapu6g02886 914 FunFam Protein argonaute 7 276 402 - -
Lapu6g02886 914 Pfam Mid domain of argonaute 477 530 IPR032473 -
Lapu6g02886 914 Pfam Argonaute linker 2 domain 424 470 IPR032472 -
Lapu6g02886 914 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 43 877 - -
Lapu6g02886 914 ProSiteProfiles Piwi domain profile. 567 875 IPR003165 GO:0003676
Lapu6g02886 914 SUPERFAMILY PAZ domain 276 438 IPR036085 GO:0005515
Lapu6g02886 914 Pfam Piwi domain 568 875 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02886 Lapu-Chr6 33540330 33549660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02886 51 914 Eukaryotic Initiation Factors Gene Family AT5G43810 35.444 6.69e-165 505