Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02868 ATGTCAAAAAAGTTGGATCGTGGAGGAGGAAGGGACCGGTTTCGGAGGGATCACCCTTCAAGGTATGAAGATAACAAGGGGAATGGGATTAGTGGACGTGACAACCGCAATAGCAACAACCCTCCTTCCAGGCATCTCTGGGTTGGGAATCTATCCCATAGTCTTGTAGAGGAAGACCTTGCTCACCATTTCTTGCGGTTTGGCTCACTGGAGAATGTTGCTTTCCAGCCTGGCCGCAGCTATGCTTTTGTTAATTTCAGAAGGGATGAAGATGCTATTGATGCTATGAGAGCACTGCAAGGTTTTCCTCTTGCTGGCAACCCACTTAGAATCGAGTTTGCAAAGGCGGATAAGTCATCTGCAGTACCACGTGATGAAGATTACTCATGGGATGAACGAAACTCAACATTAAGGGGTTCTCCTTTCTCGCAGAGGGAGTTTAGAGGACACCATGGTAGTCCTGAGCCTCATTATTCTGACAAATCTAAGCTGAGTGACAAAAATCCAGAACCCAGTGAGGTTCTGTGGATTGGGTTCCCTGCTCAGTTAAAGGTGGATGAATCAATTTTAAGAAAAGCATTTTCTCCATTTGGTGAAATAATGAAGATTACTACATTTCCAGGTCGTAGTTATGCCTTTGTTCGCTTCAGGAGCCTGACATCTGCATGCAGAGCAAGAGATAATCTGAAGGGGAAGTTATTTGGAAATCCCCGTGTACATATTTGTTTTGCCAAAAGTGAAACAGGCTCATCAAACAGTGAGAGGAGATCATTTAATGGCCCTCGCTCCCCAATTTACAAGACAACTGGTCGTGATGGATCTTCTGATAACCTCAGACAGGATCGGAGCTTCAATGCAGATCACAGCATTGGTTCCCCAAATCAGTTCCGAAATTGGGATTCTGATCCTTACGATCACAAAAGGGGTTCTTCATGGACTGGTGGAACTAACACATACGAGCAAAGGAAAGTTGGAGAGAAGGGGAGAACACTAGGAGTATCACAAGAAATCTATGAACTTATGAATAGTCCATCAAGAGAAAGACATGAAAGATTTCCTCAAAAAGGTGCATTCTATGAAGATTTGCGGGCCTTTCCAGATGTTCCCTATCTACGTGAGGCTAAAAGGCCGAGAACTGGTTCTCCTTCTCTTGAAAGGGAGCTTCCAGAGTATCCCTTCTCTGAGTTAGAAAGACAGAAACATGGTCTCCCAAGACCATTATCTGATTTACCACCACATGAGCCTTTTGATGCTGGAAATTTTACTTATGGCCAGACTCTTGATCGGCCCCCAAATTCCCCTCTGCCTCGTTTAGATAGACATGAAGGCTGGAAATCTTATGATAATTTCCAAATGGGTTCCTCTGCTCAGCAGTCAACTTATGTTGAAAAGAAAAGATTCACTCCTGAACCCGACAGTTCATCTTTAACTGAGTGGAAATGGGAAGGAACTATTGCTAAAGGTGGAACCCCTGTCTGTCGTGCACGCTGCTTTCCTGTGGGTAAAGTCCTTGATATCATGTTACCCGAATTCTTGGATTGCACTGCAAGAACTGGTCTGGATATGCTGTCAAAGCATTACTACCAAGCGGTTGGTGTTTGGGTTGTTTTTTTTGTGCCTGGAAGTGATGCTGACATGGAATTCTACAATGAATTTATGCATTATCTGGAGGAAAAGCAGCGCGCTGCTGTTGCAAAGTTGGATGACAAGACCACCTTATTTCTTGTTCCTCCATCTGAGTTCTCGGAGAAAGTACTGAAGGTACCTGGTAAGTTGAGCATATCTGGTGTTATTCTGAGGTTGGAGAATCCTGTTTTAAATAATGGTTCCGGACACATGCCAAGAGAAATGACAAACGAAAACCTGCTGTCCTATAATGAGAATATACTGCATCCGAAGTCGTCATTTCCTTCCGCACGCGTACCTACATCCCCATCTATTTCAGAATTGGGTAATTCTGGAATCAGCAATCTTTCATTTCTGGGAAATAAATTTGCAGCAGTTCCATCAGTTTCTGATGCAGCTCATGCCGTGGCCAGCATGTCTGAGTCTCATGATGAAAGAAATCGCAACTATCCTATCCAGCAGCGGACTTCCGGACCAAACTGGTCTTCTCAAAATCTTCAGAACTTCTCTAATAGAACTCTACCATTGCAACCATCTGGTGGTACTGTAGAACCTGTTGCCGATGAACGCCAACTCAACATTCCAAGGGCAGTGACAGATGTAAACTCAATCCAACATTCCACTGGAATTTCTGGTATTCCATTTTATGGTGATAACAAGTTGTCTTACCCAGATATAAGACATTTAGATCCTTTATCAGTGCCTGTGGGAGCCCTTCCACCAGAACAGCTTGCACAACTAGCTGCATCTCTTCTCGAGCAGCAGAGGCAGTCAGGAAGCTCTTCGAGTACGTCTGCTGCATTGGGTGATCGTGATCCGCGGCAGATTAACAGATTTAACACATGCGACACCCCATCGAGATTTAGCACGTCCGACACCTCATCCAGACCATCCCAGAAATATGCTACAGAAAACAATCTGGTGAGTTCTGATCTGTCAACATCTCAGCTAGGTCAAATTCTGCAGACGCAAAAGCAACAACAGATCTCAAATGCACCTCAGATGTCACAGATGGTTCAAAGGGAACCGCAAAGAGAGACTAATGGAAATCAGCTGGTGACAGATAGCAGTTTGCAGGAAGATTCTGATTCAGATCCACAGAAACGTCTACAAGCAACCCTTCAGCTGGCTGCGGTTCTTCTTCAGCAAATCCAGCAAGGAAAAGGAAGTTGA 2799 0.4452 MSKKLDRGGGRDRFRRDHPSRYEDNKGNGISGRDNRNSNNPPSRHLWVGNLSHSLVEEDLAHHFLRFGSLENVAFQPGRSYAFVNFRRDEDAIDAMRALQGFPLAGNPLRIEFAKADKSSAVPRDEDYSWDERNSTLRGSPFSQREFRGHHGSPEPHYSDKSKLSDKNPEPSEVLWIGFPAQLKVDESILRKAFSPFGEIMKITTFPGRSYAFVRFRSLTSACRARDNLKGKLFGNPRVHICFAKSETGSSNSERRSFNGPRSPIYKTTGRDGSSDNLRQDRSFNADHSIGSPNQFRNWDSDPYDHKRGSSWTGGTNTYEQRKVGEKGRTLGVSQEIYELMNSPSRERHERFPQKGAFYEDLRAFPDVPYLREAKRPRTGSPSLERELPEYPFSELERQKHGLPRPLSDLPPHEPFDAGNFTYGQTLDRPPNSPLPRLDRHEGWKSYDNFQMGSSAQQSTYVEKKRFTPEPDSSSLTEWKWEGTIAKGGTPVCRARCFPVGKVLDIMLPEFLDCTARTGLDMLSKHYYQAVGVWVVFFVPGSDADMEFYNEFMHYLEEKQRAAVAKLDDKTTLFLVPPSEFSEKVLKVPGKLSISGVILRLENPVLNNGSGHMPREMTNENLLSYNENILHPKSSFPSARVPTSPSISELGNSGISNLSFLGNKFAAVPSVSDAAHAVASMSESHDERNRNYPIQQRTSGPNWSSQNLQNFSNRTLPLQPSGGTVEPVADERQLNIPRAVTDVNSIQHSTGISGIPFYGDNKLSYPDIRHLDPLSVPVGALPPEQLAQLAASLLEQQRQSGSSSSTSAALGDRDPRQINRFNTCDTPSRFSTSDTSSRPSQKYATENNLVSSDLSTSQLGQILQTQKQQQISNAPQMSQMVQREPQRETNGNQLVTDSSLQEDSDSDPQKRLQATLQLAAVLLQQIQQGKGS* 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02868 932 MobiDBLite consensus disorder prediction 373 408 - -
Lapu6g02868 932 CDD RRM_SF 184 241 - -
Lapu6g02868 932 SUPERFAMILY RNA-binding domain, RBD 32 121 IPR035979 GO:0003676
Lapu6g02868 932 MobiDBLite consensus disorder prediction 820 849 - -
Lapu6g02868 932 MobiDBLite consensus disorder prediction 794 812 - -
Lapu6g02868 932 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 173 246 IPR000504 GO:0003723
Lapu6g02868 932 SMART rrm1_1 45 112 IPR000504 GO:0003723
Lapu6g02868 932 SMART rrm1_1 174 242 IPR000504 GO:0003723
Lapu6g02868 932 CDD RRM_SF 46 112 - -
Lapu6g02868 932 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 116 IPR000504 GO:0003723
Lapu6g02868 932 CDD SPOC_FPA-like 480 599 - -
Lapu6g02868 932 MobiDBLite consensus disorder prediction 390 404 - -
Lapu6g02868 932 MobiDBLite consensus disorder prediction 144 168 - -
Lapu6g02868 932 Gene3D - 159 257 IPR012677 -
Lapu6g02868 932 MobiDBLite consensus disorder prediction 1 42 - -
Lapu6g02868 932 MobiDBLite consensus disorder prediction 284 299 - -
Lapu6g02868 932 PANTHER RNA RECOGNITION MOTIF-CONTAINING 25 926 - -
Lapu6g02868 932 FunFam RNA recognition motif (RRM)-containing protein 159 252 - -
Lapu6g02868 932 Pfam SPOC domain 474 589 IPR012921 -
Lapu6g02868 932 MobiDBLite consensus disorder prediction 124 169 - -
Lapu6g02868 932 Gene3D - 23 122 IPR012677 -
Lapu6g02868 932 MobiDBLite consensus disorder prediction 794 849 - -
Lapu6g02868 932 MobiDBLite consensus disorder prediction 249 273 - -
Lapu6g02868 932 MobiDBLite consensus disorder prediction 455 475 - -
Lapu6g02868 932 MobiDBLite consensus disorder prediction 249 318 - -
Lapu6g02868 932 MobiDBLite consensus disorder prediction 865 912 - -
Lapu6g02868 932 MobiDBLite consensus disorder prediction 1 30 - -
Lapu6g02868 932 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 238 IPR000504 GO:0003723
Lapu6g02868 932 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 109 IPR000504 GO:0003723
Lapu6g02868 932 MobiDBLite consensus disorder prediction 865 902 - -
Lapu6g02868 932 SUPERFAMILY RNA-binding domain, RBD 164 247 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02868 Lapu-Chr6 32894794 32909639 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02868 7 264 Eukaryotic Initiation Factors Gene Family AT1G22760 23.944 7.08e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02868 - - vra:106775670 1620.52