Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02864 ATGGCGCACAGGTTGCTCAGAGACCACGAAGCCGACGGTTGGGAGCGCTCCGATTTCCCTATTATCTGCGAATCCTGCCTCGGTGATAGTCCATACGTTCGAATGACGAAAGCAGAGTATGACAAGGAGTGCAAGATTTGTACCCGTCCATTCACTGTTTTTCGATGGAGACCTGGTCGAGATGCAAGATATAAGAAAACTGAGATCTGTCAGACATGTAGTAAATTGAAAAATGTTTGTCAAGTGTGCCTTCTGGATCTTGAATATGGACTACCAGTTCAAGTTCGGGACACAGCTCTCAGTATTGATTCCAATGATGCCATTCCAAAGAGCGATGTTAATAGGGAGTATTTTGCTGAAGAGCATGACCGTAGGAAAAAAAGGATGGTGCAGGCTAGAGCTGGTATAGATCATGAATCCTCTTATGGTAAAGTACGCCCAAATGATACTATCATGAAGCTTCAAAGGACAACACCATATTACAAGAGAAACCGAGCACATATTTGCAGTTTCTACATAAGGGGTGAATGTACCAGAGGAGCTGAGTGCCCTTATCGACATGAGATGCCAGTTACTGGTGAATTGTCTCAACAAAATATTAAAGATCGTTATTATGGAGTGAATGATCCAGTGGCTTTGAAGCTACTTGGCAAGGCAGGAGAGATGTCCACTCTGGAGGCTCCTGAGGATGAGAGCATTAAAACGCTTTATGTTGGTGGACTTGATGCTAGGGTGACTGAGCAGGATTTGCGGGATCACTTCTATGCCCATGGAGAAATTGAATCTATCAAAATGGTTCTCCAACGGGCTTGTGCTTTTGTAACATATACAACCAGAGAAGGTGCAGAAAAGGCAGCAGAAGAACTCTCCAACAAATTGGTAATTAAGGGCCTAAGGCTAAAGCTGATGTGGGGCAGGCCTCAGACCTCAAAACCTGAGTCTGACGGTTCTGATCAAGCAAGGCAGCAGGCATCTGTAGCTCACAGTGGATTGTTGCCTCGAGCAGTAATATCACAACAGCAGAACCAGGACCAAACGCAAGCAATGCCTTACTATAATAATCCACCACCTTCTCAGCAGGAAAGAAGCTACTACCCATCAATGGATCCTCAAAGAATGGGTGCCCTTATTCCATCCCAAGATGGTCCTCCTGGTGGGCCTTCTGGGTCAGGGGAGAACAAGACTGGTTTGGAAAAGCAGCAGATGCAACATTATCCCCGTTCAATGATGCCTCCTCCACCTGGCCAATATCATCAGTATTATCCTCCATATGGTTATATGCCTCCAGCTCCCCCCTATCATCAGTATCCACCTCCGTACAATTCTGCAGGGCCTCCATCACAGCCTCCAGCTGCAAATCATCCTTATCATATGCAGCCAGGGTCTGGACAGGCCGCAACTGCCCCAGCTGAAACTGGAACATCAACTTCAGGGTCACAGCAGGAATAA 1449 0.4645 MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTKAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREYFAEEHDRRKKRMVQARAGIDHESSYGKVRPNDTIMKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMSTLEAPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTSKPESDGSDQARQQASVAHSGLLPRAVISQQQNQDQTQAMPYYNNPPPSQQERSYYPSMDPQRMGALIPSQDGPPGGPSGSGENKTGLEKQQMQHYPRSMMPPPPGQYHQYYPPYGYMPPAPPYHQYPPPYNSAGPPSQPPAANHPYHMQPGSGQAATAPAETGTSTSGSQQE* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02864 482 Pfam Torus domain 141 200 IPR032297 -
Lapu6g02864 482 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 236 294 IPR000504 GO:0003723
Lapu6g02864 482 Gene3D - 154 215 - -
Lapu6g02864 482 MobiDBLite consensus disorder prediction 407 453 - -
Lapu6g02864 482 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 234 307 IPR000504 GO:0003723
Lapu6g02864 482 ProSiteProfiles Zinc finger C3H1-type profile. 163 190 IPR000571 GO:0046872
Lapu6g02864 482 FunFam Zinc finger CCCH domain-containing protein 4 155 214 - -
Lapu6g02864 482 MobiDBLite consensus disorder prediction 305 327 - -
Lapu6g02864 482 MobiDBLite consensus disorder prediction 340 482 - -
Lapu6g02864 482 MobiDBLite consensus disorder prediction 340 366 - -
Lapu6g02864 482 SMART c3hfinal6 163 189 IPR000571 GO:0046872
Lapu6g02864 482 MobiDBLite consensus disorder prediction 465 482 - -
Lapu6g02864 482 SUPERFAMILY RNA-binding domain, RBD 227 315 IPR035979 GO:0003676
Lapu6g02864 482 CDD RRM_RBM22 233 306 - -
Lapu6g02864 482 SUPERFAMILY CCCH zinc finger 165 188 IPR036855 GO:0046872
Lapu6g02864 482 SMART rrm1_1 235 303 IPR000504 GO:0003723
Lapu6g02864 482 FunFam Zinc finger CCCH domain-containing protein 40 219 315 - -
Lapu6g02864 482 Gene3D - 218 316 IPR012677 -
Lapu6g02864 482 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 382 IPR039171 GO:0003723
Lapu6g02864 482 MobiDBLite consensus disorder prediction 310 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02864 Lapu-Chr6 32830445 32835017 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02864 221 295 Eukaryotic Initiation Factors Gene Family AT1G49760 35.000 2.53e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02864 K12872 - gmx:100779917 865.529