Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02862 ATGGAAGATAACAACCAGGCTTCATCTCCTGCTTCAATAACCGAAGGAAAACCGATACGATGCAAAGCGGCGGTTGCTAGAAAAGCCGGTGAGCCATTGGTTATTGAAGAGGTAATTGTGGCGCCACCGATGCCTCGTGAGGTGCGGATTCGTGTTATATGTTCCTCTCTCTGCCACAGTGACATCATTTTGCGGAATCTACAGAACCCTCCTGCCATTTTCCCAAGGATTCTAGGTCATGAGGCAACTGGGGTTGTGGAAAGTGTAGGGAAGGATGTAACTGAATTTACAAAAGGTGATGTGGTTATTCCAGTTATCCTACCAGAATGTGGGGAGTGCGTAGATTGTAAATCAACCAAGAGCAACCGTTGTACTACTTTCCCTTTCAAGGTGTCTCCTTGGATGCCCCGAGATGGTACCACCAGATTCAGTGACAAGAATGGAGGGACCATATACCATTTTTTGTTTATTTCAAGTTTCAGCGAGTACACTGTGGTGGACATTGCCAATATTATAAAGATTGATCCAGAAATTCCTCCTGACAGGGCATGCCTTCTTGGATGTGGTGTTTCAACAGGGGTAGGTGCAGCTTGGAGGACTGCAGGTGTGGAACCAGGGTCTACAGTAGCTATTTTCGGGCTGGGATCTATTGGATTAGCAGTTGCAGAGGGAGCAAGACTTTGCGGAGCTACTAGGATTATAGGTGTGGACATCTACCCAGAAAAATTTGAAATTGGAAAGAAGTTTGGAGTCACAGACTTTGTCCATGCTAGAGAATGTGGGGAAAAATCTGTGAGCCAGTTTATCATAGAGATGACTGGTGGAGGAGCAGATTATTGCTTTGAATGTGTTGGTATGGCATCAGTGGTGCATGAAGCATATGCCTCTTGTAGAAAGGGTTGGGGAAAAACAATTGTTTTAGGAGTGGACAAGCCAGGAGCCAGGATAAATCTCAGTTCCCATGAAGTCCTTCATGACGGGAAGAGCCTCATGGGATCCTTGTTTGGAGGTCTCAAACCCAAGTCTCATGTACCTATTCTCCTTAAACGTTATGTGGACAAGGACATTTCTAGTCTATTAACTTTTGCCCCATATATTGATAGGAATTGCAGTTGGACGAATTTGTCACTCATGAGGTGGAGTTTAAGGACATCAACAAAGCTTTTGATTTATTGA 1176 0.4464 MEDNNQASSPASITEGKPIRCKAAVARKAGEPLVIEEVIVAPPMPREVRIRVICSSLCHSDIILRNLQNPPAIFPRILGHEATGVVESVGKDVTEFTKGDVVIPVILPECGECVDCKSTKSNRCTTFPFKVSPWMPRDGTTRFSDKNGGTIYHFLFISSFSEYTVVDIANIIKIDPEIPPDRACLLGCGVSTGVGAAWRTAGVEPGSTVAIFGLGSIGLAVAEGARLCGATRIIGVDIYPEKFEIGKKFGVTDFVHARECGEKSVSQFIIEMTGGGADYCFECVGMASVVHEAYASCRKGWGKTIVLGVDKPGARINLSSHEVLHDGKSLMGSLFGGLKPKSHVPILLKRYVDKDISSLLTFAPYIDRNCSWTNLSLMRWSLRTSTKLLIY* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02862 391 FunFam S-(hydroxymethyl)glutathione dehydrogenase 193 333 - -
Lapu6g02862 391 Pfam Alcohol dehydrogenase GroES-like domain 46 174 IPR013154 -
Lapu6g02862 391 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 178 352 IPR036291 -
Lapu6g02862 391 Pfam Zinc-binding dehydrogenase 217 337 IPR013149 -
Lapu6g02862 391 FunFam alcohol dehydrogenase 1-like isoform X1 29 192 - -
Lapu6g02862 391 PANTHER ALCOHOL DEHYDROGENASE 16 357 - -
Lapu6g02862 391 Gene3D - 193 333 - -
Lapu6g02862 391 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 79 93 IPR002328 GO:0008270|GO:0016491
Lapu6g02862 391 Gene3D - 24 356 - -
Lapu6g02862 391 SUPERFAMILY GroES-like 14 199 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02862 Lapu-Chr6 32742832 32766516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02862 46 214 Monolignol Biosynthesis Gene Families AT4G37970 28.824 1.58e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02862 K00121 - gmx:100817521 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02862 6 32742832 32766516 Lapu6g02862 6 32742832 32766516 ECH
Lapu6g02862 6 32742832 32766516 Lapu6g02862 6 32742832 32766516 PCT