Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02861 ATGCACCAATTTGGTTTAGTAAAGAAGATTGATGAAATCAACATTCTTTGTGGGATTGAAGCATGTGCTATAATTTATACTCCAAATAATCCTCAGGCAGAGGTTTGGCCATCTGAGAGGGGAGTCCAGAGTGTGCTTTCCAGGTTCAGGGGAGTGTCTGAACTGGAGAAAGGCAAAAAGAAGTTGTGTCAAGAGAGCTTTCTGAGGCAGAGGATCATCAAAGCACAAGGGCAACTAAGAAAACTGAGGAATGAAATTAGGAAGAAAGAGGTGACCCTTCTCATGTTTCAATACCTCAATACTAACAACAACTTTGACAATTCCAGAATGATTGATCTCAATGATATCTCAAACTTGATTGATCAAAACTTGGAGAAAATAGAAAACAACATAAGCCAAGCCCAAAAGGTGAAACCTGTTGCTGAAAATGGAGGAGAAACCATGAGTGCACTTGTGAAAGGGACCATGCAAAATCATAATTTGTCTGTGGAACTCACCAATGGCAACGGGGATGAGATAAAACCATTGGGTGAGGTTAATGTTCTAAGTCTTTGA 555 0.4 MHQFGLVKKIDEINILCGIEACAIIYTPNNPQAEVWPSERGVQSVLSRFRGVSELEKGKKKLCQESFLRQRIIKAQGQLRKLRNEIRKKEVTLLMFQYLNTNNNFDNSRMIDLNDISNLIDQNLEKIENNISQAQKVKPVAENGGETMSALVKGTMQNHNLSVELTNGNGDEIKPLGEVNVLSL* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02861 184 Coils Coil 117 137 - -
Lapu6g02861 184 Gene3D - 2 72 IPR036879 GO:0003677|GO:0046983
Lapu6g02861 184 FunFam Agamous-like MADS-box protein AGL80 2 76 - -
Lapu6g02861 184 SUPERFAMILY SRF-like 4 72 IPR036879 GO:0003677|GO:0046983
Lapu6g02861 184 Coils Coil 65 92 - -
Lapu6g02861 184 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 4 30 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02861 Lapu-Chr6 32721903 32723141 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02861 10 155 Type I MADS-box Gene Family AT5G48670 39.744 4.33e-31 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lapu6g02861 SRF-TF 1.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02861 - - vum:124845341 290.426