Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02807 ATGGCTTTCACACTAGAAAGGTTTGAGGAGAGCATGGTGTTCTCTTTTGAGTCTCAGAAGTCAGTGCCAGCACCTTTCCTCACAAAGACATATCAGCTTGTTGATGACCCTCTCACTGACCACATTGTTTCATGGGGTGAAGATGAAACTACATTTGTTGTGTGGAGACCCCCTGAGTTTTCCAGAGATCTTCTTCCCAACTACTTCAAACACAACAACTTCTCAAGCTTTGTTAGGCAACTCAACACCTATGGTTTCAAGAAGGTAGTTGCTGATAGATGGGAGTTTGCAAATGAGTACTTCAGAAAAGGAGCTAAGCACCTTTTGTGTGAAATACACAGGAGGAAAACATCTCAGCAACATCACCAACTCTACCATGACCAACCACCATCCCAGATTCTTCAACATGATGAAAGTTTCTGCTGGCTTGACACTCCACTTTCATCTCCAAAACCAAGCACAGACATTCTAACAGCCCTTTCTGAAGACAACCAAAGACTAAGGAGAAAGAACTTCATGCTCTTGTCAGAACTTAGTCACATGAAGAGTTTGTACAATGACATCATATATTTCATCCAAAACCATGTAAAACCACCACCCTTTGAACAAAGAACCAGCACTGCCATTCCAAAGCTGGTGGAGTTGGACACATTGCATGAGTCACCAAATAACATAGGTCTCAGAACTTCAGAAAGTTGCATTGTGGATAAGTCTTTGATTGCTTCTACTGAAGAATCAAACACTTCTGTGAAGCTCTTTGGGGTCCCTCTAAGTAAAAAGAGATTGCACCCAGATAACATTAATTGA 807 0.4164 MAFTLERFEESMVFSFESQKSVPAPFLTKTYQLVDDPLTDHIVSWGEDETTFVVWRPPEFSRDLLPNYFKHNNFSSFVRQLNTYGFKKVVADRWEFANEYFRKGAKHLLCEIHRRKTSQQHHQLYHDQPPSQILQHDESFCWLDTPLSSPKPSTDILTALSEDNQRLRRKNFMLLSELSHMKSLYNDIIYFIQNHVKPPPFEQRTSTAIPKLVELDTLHESPNNIGLRTSESCIVDKSLIASTEESNTSVKLFGVPLSKKRLHPDNIN* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02807 268 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu6g02807 268 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Lapu6g02807 268 FunFam Heat stress transcription factor B-4 18 116 - -
Lapu6g02807 268 Gene3D - 18 117 IPR036388 -
Lapu6g02807 268 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu6g02807 268 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu6g02807 268 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu6g02807 268 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu6g02807 268 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu6g02807 268 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 20 206 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02807 Lapu-Chr6 30399608 30401177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02807 10 263 HSF AT1G46264 51.299 7.29e-91 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lapu6g02807 HSF_DNA-bind 2.6e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02807 K09419 - gmx:100806150 490.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02807 6 30399608 30401177 Lapu6g02807 6 30399608 30401177 ECH
Lapu6g02807 6 30399608 30401177 Lapu6g02807 6 30399608 30401177 PCT