Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02803 ATGGGCAACTGTTGCTCTCAAGGCAACGCTGCCGATGGCCCGGCCGACATCGCCGCGGCAGATGAGGGAGTAACCAACCAACAAGCTAGCGTTCATTCAAATAACAATAATAATCAGGATGATTCTGCCACAAACCCTACCACCCCACCACCATCGGCGTCACCGCCCACCGTCGCACCGCCTCCTTCAAAATCCTTAAAACCGGCCGCCATGGGGCCTGTCCTCAACCGGCCCATGGAGGACGTGAGAGCAGCGTACACCATCGGGAAGGAGCTAGGGAGAGGCCAATTTGGTGTCACACATTTGTGCACAGACAAAACAACTGGTGAACAGTTTGCATGCAAAACCATTGCCAAGAGGAAGCTTGTGAGCAAGGAGGATATAGAGGACGTGAGAAGAGAGGTGCAAATCATGCTCCACCTCGCAGGCCAACCTAACATCGTGGAACTTAAAGGTGCCTATGAGGATAAACAATCTGTGCATTTGGTCATGGAGCTTTGTGCTGGTGGTGAACTTTTTGATCGTATCATTGCCAAGGGACATTACACCGAACGTGCTGCAGCTTCTTTGTTGAGAACCATTGTTCAAATTGTTCATACCTTCCATTCCATGGGTGTCATTCACAGAGATCTTAAGCCTGAGAATTTCCTCTTGTTGAATAAGGATGAAAATGCACCCCTCAAGGCCACAGATTTTGGTCTATCAGTTTTCTTCAAAGAAGGAGAGACGTTCAAAGACATTGTTGGAAGTGCATATTACATTGCTCCTGAGGTTTTGAAGAGGAAATATGGACCAGAAGTTGACATATGGAGTGTTGGTGTCATGCTATACATTCTTCTATGTGGTGTTCCTCCATTTTGGGCAGAATCCGAACATGGTATATTCAATGCCATTCTTAGAGGCCACGTTGATTTTACAAGCGATCCATGGCCTTCAATTTCACCTTCAGCAAAGGATCTTGTAAGTAACATGCTGAATTCAGATCCCAAAGAAAGATTCACAGCATCCCAAGTTCTAGATCATCCATGGATCAAGGAGGATGGAGAAGCACCAGATAAACCACTTGACAATGCAGTACTGAATAGGCTCAAACAGTTCAGAGCAATGAACCAATTCAAGAAAGTTGCTCTAAGGGTCATTGCTGGGTGTCTATCGGAAGAAGAAATCATGGGGTTGAAGGAAATGTTCAAGGGCATGGACACTGACAACAGTGGAACCATCACAATTGAAGAGCTCAAACAAGGGCTTGCAAAGCAAGGCACAAAGCTGACAGAACAAGAAGTTAAGCAGTTAATGGAAGCTGCTGATGCTGATGGCAATGGAACCATTGATTACGACGAGTTCATCACGGCAACAATGCAGATGAACCGAATGAACAGAGAAGAACATCTTTACACTGCTTTCCAATACTTCGATAAAGATAATAGCGGGTTCATTACCACTGAGGAACTCGAACAAGCTCTCCGGGAGTTTAACATGCATGATGGCAGGGACATCAAGGAAATCCTTCAAGAAGTTGATGGAGATAATGATGGCCGAATTAACTATGATGAGTTTGTGGCAATGATGAGAAAAGGAAATCCAGAAGCTGTGACTAGGAAGAGGCGTGATTCAATGCCCTTGGCTTAG 1629 0.4567 MGNCCSQGNAADGPADIAAADEGVTNQQASVHSNNNNNQDDSATNPTTPPPSASPPTVAPPPSKSLKPAAMGPVLNRPMEDVRAAYTIGKELGRGQFGVTHLCTDKTTGEQFACKTIAKRKLVSKEDIEDVRREVQIMLHLAGQPNIVELKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAASLLRTIVQIVHTFHSMGVIHRDLKPENFLLLNKDENAPLKATDFGLSVFFKEGETFKDIVGSAYYIAPEVLKRKYGPEVDIWSVGVMLYILLCGVPPFWAESEHGIFNAILRGHVDFTSDPWPSISPSAKDLVSNMLNSDPKERFTASQVLDHPWIKEDGEAPDKPLDNAVLNRLKQFRAMNQFKKVALRVIAGCLSEEEIMGLKEMFKGMDTDNSGTITIEELKQGLAKQGTKLTEQEVKQLMEAADADGNGTIDYDEFITATMQMNRMNREEHLYTAFQYFDKDNSGFITTEELEQALREFNMHDGRDIKEILQEVDGDNDGRINYDEFVAMMRKGNPEAVTRKRRDSMPLA* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02803 542 FunFam calcium-dependent protein kinase 1 172 351 - -
Lapu6g02803 542 ProSitePatterns Protein kinases ATP-binding region signature. 92 119 IPR017441 GO:0005524
Lapu6g02803 542 ProSitePatterns EF-hand calcium-binding domain. 472 484 IPR018247 -
Lapu6g02803 542 ProSiteProfiles Protein kinase domain profile. 86 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g02803 542 CDD STKc_CAMK 86 343 - -
Lapu6g02803 542 ProSitePatterns EF-hand calcium-binding domain. 507 519 IPR018247 -
Lapu6g02803 542 ProSiteProfiles EF-hand calcium-binding domain profile. 459 494 IPR002048 GO:0005509
Lapu6g02803 542 SUPERFAMILY Protein kinase-like (PK-like) 73 372 IPR011009 -
Lapu6g02803 542 Pfam Protein kinase domain 86 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g02803 542 Gene3D Phosphorylase Kinase; domain 1 87 171 - -
Lapu6g02803 542 ProSiteProfiles EF-hand calcium-binding domain profile. 498 529 IPR002048 GO:0005509
Lapu6g02803 542 SMART serkin_6 86 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g02803 542 ProSiteProfiles EF-hand calcium-binding domain profile. 387 422 IPR002048 GO:0005509
Lapu6g02803 542 SMART efh_1 498 526 IPR002048 GO:0005509
Lapu6g02803 542 SMART efh_1 391 419 IPR002048 GO:0005509
Lapu6g02803 542 SMART efh_1 427 455 IPR002048 GO:0005509
Lapu6g02803 542 SMART efh_1 463 491 IPR002048 GO:0005509
Lapu6g02803 542 FunFam Calcium-dependent protein kinase 1 352 527 - -
Lapu6g02803 542 PANTHER SERINE/THREONINE-PROTEIN KINASE 81 519 - -
Lapu6g02803 542 ProSitePatterns EF-hand calcium-binding domain. 400 412 IPR018247 -
Lapu6g02803 542 MobiDBLite consensus disorder prediction 48 67 - -
Lapu6g02803 542 ProSiteProfiles EF-hand calcium-binding domain profile. 423 458 IPR002048 GO:0005509
Lapu6g02803 542 ProSitePatterns EF-hand calcium-binding domain. 436 448 IPR018247 -
Lapu6g02803 542 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Lapu6g02803 542 MobiDBLite consensus disorder prediction 23 47 - -
Lapu6g02803 542 Gene3D - 352 527 - -
Lapu6g02803 542 FunFam Calcium-dependent protein kinase 1 88 171 - -
Lapu6g02803 542 Pfam EF-hand domain pair 461 524 IPR002048 GO:0005509
Lapu6g02803 542 Pfam EF-hand domain pair 392 452 IPR002048 GO:0005509
Lapu6g02803 542 SUPERFAMILY EF-hand 384 524 IPR011992 -
Lapu6g02803 542 MobiDBLite consensus disorder prediction 1 75 - -
Lapu6g02803 542 Gene3D Transferase(Phosphotransferase) domain 1 172 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02803 Lapu-Chr6 30286705 30290328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02803 1 537 EF-hand Containing Proteins AT5G12180 79.330 0.0 888
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lapu6g02803 Pkinase 1e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02803 K13412 - gmx:100781355 943.725