Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02789 ATGGTTGAAGGCAAAGTGATTTGGCCAATTCCAAAGCCAAGAGACACTGTTTGTGGCACAATGACGAACATGGCAATCTCCCTCTCGCAAATCTCCGTCTCCGGAGACTCAGATTCTGAATCCTCTTGGGACAACCACACTAGCTCCTCCTCCCACTGCCCTCGCCTTCCATCACTTCCACTACCGACCACAAACGAACTTTGGCAGAATCTACCTCTTGCCACTCCACCCTCCAAGAAGCCACGTGGTAGACCCCCAGGCTCCAAGAACAAGCCCAAGTACACTATGCCTCAACCCTCCATCAAGATTCTCATCGTTAATGTCGCTCCAGGACGAGACATCATCGAGACCATTCTTGACATCGCTCGTCGAACCCATGTCAGCCTCACCATCCTCAGCGCCTCCGGTAGCATCACCACCGTCACCCTCCGTGATGCCCCTAATGGTTCCTCCGCCGTCATGCTCCATGGACCCTTCAACTTGCTCTCCCTTACTGGCTCCTACTTGTACAACAACCAATGCACCCTTCTCCCTGGAGCCTCCCTTCCTCGTTCCTTATCCTTTGGGATTCACCTCTCCACCTCTCATGGTCGAGTCTTCGGCGGCCCCGTCGGTGGTAGAGTCGTTGCCGGTGATGATGTCAGCTTGACCATCTCTACCTTCAAGAACCCTGAAATTTACAAATATGTTCCTGAAGGTCAAGAAAGGAATGATCATGACGATAACAACAACCACCACAGCAACAAAACTTGTAACCATAACCCTAGTAATTTCAATACGGGTGGCGATTTGTCGATGTTCAACTCTGCTAGTTTCGGAATCCGTGGGTGGTGA 834 0.5144 MVEGKVIWPIPKPRDTVCGTMTNMAISLSQISVSGDSDSESSWDNHTSSSSHCPRLPSLPLPTTNELWQNLPLATPPSKKPRGRPPGSKNKPKYTMPQPSIKILIVNVAPGRDIIETILDIARRTHVSLTILSASGSITTVTLRDAPNGSSAVMLHGPFNLLSLTGSYLYNNQCTLLPGASLPRSLSFGIHLSTSHGRVFGGPVGGRVVAGDDVSLTISTFKNPEIYKYVPEGQERNDHDDNNNHHSNKTCNHNPSNFNTGGDLSMFNSASFGIRGW* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02789 277 MobiDBLite consensus disorder prediction 33 96 - -
Lapu6g02789 277 Pfam Plants and Prokaryotes Conserved (PCC) domain 103 222 IPR005175 -
Lapu6g02789 277 MobiDBLite consensus disorder prediction 233 256 - -
Lapu6g02789 277 ProSiteProfiles PPC domain profile profile. 97 242 IPR005175 -
Lapu6g02789 277 MobiDBLite consensus disorder prediction 33 72 - -
Lapu6g02789 277 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 39 251 IPR014476 GO:0003680
Lapu6g02789 277 MobiDBLite consensus disorder prediction 233 247 - -
Lapu6g02789 277 Gene3D - 100 248 - -
Lapu6g02789 277 FunFam AT-hook motif nuclear-localized protein 17 100 237 - -
Lapu6g02789 277 CDD DUF296 102 211 IPR005175 -
Lapu6g02789 277 SUPERFAMILY AF0104/ALDC/Ptd012-like 100 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02789 Lapu-Chr6 30040700 30042481 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02789 79 237 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 33.735 3.53e-22 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02789 - - pvu:PHAVU_006G013800g 325.865