Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02788 ATGCCAGACTTCCCCTCCCATAACTTCCCCTCTTCTAACACAGAATTTGGATCCTCCTCCCATGCACCACCACCACCACCACCACCACCACCACCCGTCAGGCTCGTCATTCTTACGGTGCCTTCGGGATGTGACATCATGAAGGCCATTCGCCACGTTGCTCGGCGAAGCAACGCCAGCCTCGCCGTCCAAAGTGCCTCCGGTACCATTGCTTCTGTGACCCTCCGTAACATCCCCTGTGGTGGCTCTAGTATCATTGTCTATGGGCCATTCAACATACTTTCTTTCACTGGCTCCTACATTAATGATCACCAACACACCCTTCTCCCCGAAGTCACCTCTCCACCTTCCTTTTCCGTTGGGACTCACCTTTCCACCTCTGATGGCCGTGTCTTCGGTGGTCACATCGGTGGTCGGGTCATCGCCGATAGCGACGTCATCTTGACCATCTTCGCTTTCAAGAACCCTGAAATCTACAACTACATTCCTGAAGGCGAAGACAGCGATGATGATGATGATGAGAATGAGGATAACAATAGTAACAACGACCCTGGTAACGTAGGTGACATGTAA 573 0.5201 MPDFPSHNFPSSNTEFGSSSHAPPPPPPPPPPVRLVILTVPSGCDIMKAIRHVARRSNASLAVQSASGTIASVTLRNIPCGGSSIIVYGPFNILSFTGSYINDHQHTLLPEVTSPPSFSVGTHLSTSDGRVFGGHIGGRVIADSDVILTIFAFKNPEIYNYIPEGEDSDDDDDENEDNNSNNDPGNVGDM* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02788 190 CDD DUF296 34 151 IPR005175 -
Lapu6g02788 190 Gene3D - 33 165 - -
Lapu6g02788 190 MobiDBLite consensus disorder prediction 161 190 - -
Lapu6g02788 190 MobiDBLite consensus disorder prediction 1 32 - -
Lapu6g02788 190 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 33 177 IPR014476 GO:0003680
Lapu6g02788 190 SUPERFAMILY AF0104/ALDC/Ptd012-like 33 157 - -
Lapu6g02788 190 ProSiteProfiles PPC domain profile profile. 30 180 IPR005175 -
Lapu6g02788 190 MobiDBLite consensus disorder prediction 163 179 - -
Lapu6g02788 190 MobiDBLite consensus disorder prediction 1 19 - -
Lapu6g02788 190 Pfam Plants and Prokaryotes Conserved (PCC) domain 35 154 IPR005175 -
Lapu6g02788 190 SUPERFAMILY Formin homology 2 domain (FH2 domain) 23 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02788 Lapu-Chr6 29976061 29977421 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02788 31 181 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 32.468 2.62e-15 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02788 - - pvu:PHAVU_006G007300g 175.637