Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02784 ATGCCAGACTTCCCCTCCCATAACTTCCCCTCTTCTAACACAGAATTTGGATCCTCCTCCCATGCACCACCACCACCACCACCACCACCCGTCAGGCTCGTCATTCTTACGGTGCCTTCGGGATGTGACATCATGAAGGCCATTCGCCACGTTGCTCGGCGAAGCAACGCCAGCCTCGCCGTCCAAAGTGCCTCCGGTACCATTGCTTCTGTGACCCTCCGTAACATCCCCTGTGGTGGCTCTAGTATCATTGTCTATGGGCCATTCAACATACTTTCTTTCACTGGCTCCTACATTAATGATCACCAACACACCCTTCTCCCCGAAGTCACCTCTCCACCTTCCTTTTCCGTTGGGACTCACCTTTCCACCTCTGATGGCCGTGTCTTCGGTGGTCACATCGGTGGTCCGGTCATCGCCGATAGCGACGTCATCTTGACCATCTTCGCTTTCAAGAACCCTGAAATCTACAACTACATTCCTGAAGGCGAAGACAGCGATGATGATGATGATGAGAATGAGGATAACAATAGTAACAACGACCCTGGTAACGTAGGTGACATGTAA 567 0.5185 MPDFPSHNFPSSNTEFGSSSHAPPPPPPPPVRLVILTVPSGCDIMKAIRHVARRSNASLAVQSASGTIASVTLRNIPCGGSSIIVYGPFNILSFTGSYINDHQHTLLPEVTSPPSFSVGTHLSTSDGRVFGGHIGGPVIADSDVILTIFAFKNPEIYNYIPEGEDSDDDDDENEDNNSNNDPGNVGDM* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02784 188 CDD DUF296 32 149 IPR005175 -
Lapu6g02784 188 SUPERFAMILY AF0104/ALDC/Ptd012-like 31 155 - -
Lapu6g02784 188 MobiDBLite consensus disorder prediction 159 188 - -
Lapu6g02784 188 Gene3D - 31 163 - -
Lapu6g02784 188 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 31 175 IPR014476 GO:0003680
Lapu6g02784 188 ProSiteProfiles PPC domain profile profile. 28 178 IPR005175 -
Lapu6g02784 188 Pfam Plants and Prokaryotes Conserved (PCC) domain 33 152 IPR005175 -
Lapu6g02784 188 MobiDBLite consensus disorder prediction 161 177 - -
Lapu6g02784 188 MobiDBLite consensus disorder prediction 1 30 - -
Lapu6g02784 188 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02784 Lapu-Chr6 29838599 29839947 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02784 29 179 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 33.117 1.25e-16 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02784 - - pvu:PHAVU_006G007300g 173.711