Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02778 ATGAGAAACAATCCAATGACAATCTCCAATTCAGACTCCGTCTCCTCCGAGGACCACCACATTGGCTCCTCTTCCCAAAGCAGTGCACCACAACCACCACCGCCACCACCCACCGCCACCAATCATCATGTCACTACCCCATCTTCAAAGAAGCCACGTGGGAGGCCCCTAGGTTCCAAGAACAAGTCAAGGTCCATCCCTATGCCAATGCCCCAACCAAATGAACCCTTTGTGAAGGTCCTGGTTGTCAACGTGGATCCAGATAGGGACATCATGGAGTGCCTCCTTGACATTGCTCACCAAGGCCATGTCAGCCTCTCCGTCCTTAGTGCCTTTGGCACAATCAATAGCGTAACCCTTCGCAACTCAACCCATGGTGACCCATCCCTCGTGCTCCACGGCCCATTCAAATTACTCTCCCTTACCGGCTCCTACTTATACAACAACCACTACACCCTTCACCTTGGAGCCACCCCTCCTGGTCCCCTGTCCTTTGGAATCAACCTCTCCACCACTAAAGGCGACATCTTCAGTGGCGTTATCGGTGGCAGAGTCATCGCTGGTGAGGGCGTTAGCTTGACAGTTTCCACCTACAAGAATCCTGATATTTTAAAGTACACTCCTGAAAATGAAGAAGGGGATGGCAATAGCAGCGACAATGAAAAA 666 0.515 MRNNPMTISNSDSVSSEDHHIGSSSQSSAPQPPPPPPTATNHHVTTPSSKKPRGRPLGSKNKSRSIPMPMPQPNEPFVKVLVVNVDPDRDIMECLLDIAHQGHVSLSVLSAFGTINSVTLRNSTHGDPSLVLHGPFKLLSLTGSYLYNNHYTLHLGATPPGPLSFGINLSTTKGDIFSGVIGGRVIAGEGVSLTVSTYKNPDILKYTPENEEGDGNSSDNEK 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02778 222 CDD DUF296 79 188 IPR005175 -
Lapu6g02778 222 Gene3D - 77 211 - -
Lapu6g02778 222 MobiDBLite consensus disorder prediction 1 27 - -
Lapu6g02778 222 FunFam AT-hook motif nuclear-localized protein 17 77 214 - -
Lapu6g02778 222 Pfam Plants and Prokaryotes Conserved (PCC) domain 80 197 IPR005175 -
Lapu6g02778 222 MobiDBLite consensus disorder prediction 1 73 - -
Lapu6g02778 222 ProSiteProfiles PPC domain profile profile. 75 221 IPR005175 -
Lapu6g02778 222 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 20 216 IPR014476 GO:0003680
Lapu6g02778 222 SUPERFAMILY AF0104/ALDC/Ptd012-like 78 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02778 Lapu-Chr6 29724257 29724922 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02778 51 222 AT-hook Motif Nuclear Localized (AHL) Family AT1G14490 28.571 5.16e-15 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02778 - - vra:106779930 317.775