Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02771 GTTGTGTTCAAAACTTGGAATTGGGAATTGAGATTTTCGTGTAAAGATTCAATCTTTTTACTGTTTCCTTCGTGCCTTTGGCATCACAGAATCATTCTTCGGCATATTTCTTTTTCCTTCTCTCTCTACTCCTTCTATCTATTACTCTTGATTTCCCTTCATCAGGTTTTTCTATTGTATGATTCTGCGTTTCTGCACACACCACTATACTTTCTTCTGTACCTTCCTTGTGGATCTGTCACTATGACTTCCTCACTCGTGAAGATCCAAGGCGAACAGGTCCTAACAAGCGAGTTTATGGACCTTTCAATCAAAGATCTGAGTGAGAAAGGGAGTGAGGCAGTGATTCACGAGGTGGGTAATGGAAGCCATGGGGGAATCTGTGCTATTTGTCTGGATGAAATAGTGCTGCAGGAAACTGCTCTTGTAAAAGGTTGCGAGCATGCTTACTGTGTAACTTGCATTCTTCGATGGGCTACGTACCGTGAGAAGGTTACGTGCCCTCAGTGTAAACATCCATTCGAGTTCCTCAATATCCATCGCACACTTGATGGCTGCATTCAAGATTACATGTTTGAGGAGAGTGTTTGTCTGCTACTCCGAGCCTCGTGGTTCAAACCTTTATCTATTGAAGAACACGTGGTGCACGAAGATGCATACGAGGATCTAGAGGATTACTATCAATATCAATACGAGGACGAGGACGATGATATGGATGAAGCTTACTATGGTGGTTCGTCTAGTTTTCGTATTGGTAACCGCCGGTGGGGAGACAATGGCTATGTTAGGGCTGGTCGCCAAGAAGCTCGGCCGGTCCATCGACCGAACTTCCAGGATTCCGGAGCAAGTTCATCGCGTGAGCCAAGGAAGAAAGAGGTCGGGAAAAGCACCACAGGTAGAAGGGCAAAGAGAGCACAGAAAAGGGAAGCTGCTGATAAGGCAGCTGAAGCAAAACATCAGCAGCATTTGGTAAGGCTGGGTAGGAAGTGA 990 0.4545 VVFKTWNWELRFSCKDSIFLLFPSCLWHHRIILRHISFSFSLYSFYLLLLISLHQVFLLYDSAFLHTPLYFLLYLPCGSVTMTSSLVKIQGEQVLTSEFMDLSIKDLSEKGSEAVIHEVGNGSHGGICAICLDEIVLQETALVKGCEHAYCVTCILRWATYREKVTCPQCKHPFEFLNIHRTLDGCIQDYMFEESVCLLLRASWFKPLSIEEHVVHEDAYEDLEDYYQYQYEDEDDDMDEAYYGGSSSFRIGNRRWGDNGYVRAGRQEARPVHRPNFQDSGASSSREPRKKEVGKSTTGRRAKRAQKREAADKAAEAKHQQHLVRLGRK* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02771 329 Coils Coil 300 320 - -
Lapu6g02771 329 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 85 329 - -
Lapu6g02771 329 ProSiteProfiles Zinc finger RING-type profile. 128 171 IPR001841 -
Lapu6g02771 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 177 IPR013083 -
Lapu6g02771 329 MobiDBLite consensus disorder prediction 265 329 - -
Lapu6g02771 329 SMART ring_2 128 170 IPR001841 -
Lapu6g02771 329 Pfam Ring finger domain 128 171 IPR001841 -
Lapu6g02771 329 SUPERFAMILY RING/U-box 127 177 - -
Lapu6g02771 329 ProSitePatterns Zinc finger RING-type signature. 146 155 IPR017907 -
Lapu6g02771 329 MobiDBLite consensus disorder prediction 284 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02771 Lapu-Chr6 29559865 29563842 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02771 84 329 C3H Transcription Factor Family AT5G19430 56.641 6.04e-89 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02771 - - gmx:100777135 394.43