Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02770 ATGTGGCCCGGGGCGTCGAGGTCATTCAACCACAACCTCTCACCTCGCCACGACATCTTCGTGGTGGCGCCTGCGTCGTCGTTCCATCACCCTCACCACAACGACGCTGTTTTGTCCGATCCAAACAACAACAATTCCAACGCTACTGCACTCGGCGTCAACGTCTTCCCTCTCCTCACCGCCACGCCATGTCTCACTCCCGAGAGCGAGGGTATAATGGGAAACATCAATAATCACCGTAACAGAATTCAGCTATGGCAACCGCAGGAATCACCACAACACCAACACCAACACCAACATGCCGACGGCGTGTTGGCGAGTAACCACCGTAACAGAATTCAGTTATGGCAGGAGCACGACGACTCTCCGCCGCCGCATCACCAGCAGCAACAACACCCGAACTCGCACGTGCACGAGCGTGAGGGGAGTGGAAGTGGGAGCGGCGCGAGCACGTGCCAGGACTGTGGAAACCAGGCGAAAAAGGATTGTAGTCACAGGAGGTGCAGGACGTGCTGCAAGAGTAGGGGTTTCGATTGCGCCACGCACGTGAAGAGCACGTGGGTTCCGGCGGCGCGGCGGAGGGAGCGCCAGCTCATGGCGGTGACGGCAGCTGTTGGGTCCAGTGGGTCGTCTTCTGCTACCAAGAAACCTAGGCTAGTGCCTTCTCAGACAACAACCACTTCGCATACTTCCACGTCTAATAACACCACCACTCCTCCTAGGAGTTTCGACACTGGTTCTAGCCACCAAGATGTGGGTTTCAAGGAGTCATTACCTTGCCAAGTGCGTGCACCAGCAGAGTTCAAGTGTGTTCGTGTGACTGCAGTGGATGATGGGGATGATGAGTATGCGTATCAAGCTGTGGTGAAAATTGGTGGTCATGTGTTCAAAGGGTTCCTCTATGATCTAGGGGTTGAGGATAAAAGTGAGTATCCTAATCTATCTGAATTGCATTTGGGTGGTGGTGGAAATGTTGCAACTGGAAGTGATGGTGGTGGTAGAAATGGGGTTTCTTCTTCTTCTCCAATGGTGGATCCTTCTGATGTCTTTGCAGCTTCTGCTGGAGTTTTACTTGGAGGTTCATCAAACTATGGTAATGCAATAAATTAA 1110 0.5297 MWPGASRSFNHNLSPRHDIFVVAPASSFHHPHHNDAVLSDPNNNNSNATALGVNVFPLLTATPCLTPESEGIMGNINNHRNRIQLWQPQESPQHQHQHQHADGVLASNHRNRIQLWQEHDDSPPPHHQQQQHPNSHVHEREGSGSGSGASTCQDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMAVTAAVGSSGSSSATKKPRLVPSQTTTTSHTSTSNNTTTPPRSFDTGSSHQDVGFKESLPCQVRAPAEFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDLGVEDKSEYPNLSELHLGGGGNVATGSDGGGRNGVSSSSPMVDPSDVFAASAGVLLGGSSNYGNAIN* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02770 369 MobiDBLite consensus disorder prediction 117 139 - -
Lapu6g02770 369 MobiDBLite consensus disorder prediction 117 156 - -
Lapu6g02770 369 MobiDBLite consensus disorder prediction 140 156 - -
Lapu6g02770 369 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 27 353 IPR007818 GO:0003700|GO:0006355
Lapu6g02770 369 NCBIfam putative zinc finger domain, LRP1 type 151 193 IPR006510 -
Lapu6g02770 369 Pfam Domain of unknown function (DUF702) 149 306 - -
Lapu6g02770 369 NCBIfam LRP1 C-terminal domain 258 305 IPR006511 -
Lapu6g02770 369 MobiDBLite consensus disorder prediction 203 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02770 Lapu-Chr6 29511151 29514939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02770 152 349 C2H2 Transcription Factor Family AT5G12330 65.534 2.66e-79 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lapu6g02770 DUF702 2e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02770 - - gmx:100816514 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02770 6 29511151 29514939 Lapu6g02770 6 29511151 29514939 ECH