Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02765 ATGTCACGCACTGATACGATGACGACGACTTCGGATCTTAATAGAACTGGTCCCGTGGAAAGAGACATTGAACAGGCTATTACTGCTTTGAAAAAAGGGGCATACTTGCTCAAGTATGGAAGAAGAGGGAAGCCCAAGTTTTGTCCTTTTCGACTTTCCAATGATGAATCTGTTTTGATATGGTTCTCGGGGAAAGAAGAGAAGAGCCTTAAACTAACTAATGTTTCTAGGATTATATCTGGACAACGCACACCAATCTTTCAAAGATATCCACGGCCTGAGAAGGAATACCAATCGTTTTCTCTCATGTACAATGATAGATCGTTAGACTTGATTTGTAAGGATAAAGATGAAGCTGAGGTTTGGTTCAGTGGGTTGAAAGCATTAATTTCACGCAGTCGCCACAGGAAGTGGAAACCGGAGTCAAGAAGTGATGGTATTCTGTCTGAAGCTAATAGTCCTCGAACGTACACTAGAAGAAGTTCTCCCTTGAATTCTCCATTTGGTAGTAATGAAAGCTTGCCAAAGGATAGTGGGGATCATCTTCGCCTTCATAGCCCATATGAAAGTCCCCCAAAGAATGGTTTGGATAAAGCATTTTCTGATGTGATGTATTATCCTATTCCTCCAATGGGTTTCTTCCCTCCAGATTCTGTGAGTGGTTCGCTGCACTCTGTGTCATCAGGAGGATCAGATAGCATGCATGGTCAAATGAAGACAATGCCTATGGATGCTTTTAGAGTTAGTCTATCAAGTGCTGTTAGCTCATCTAGCCAAGGTTCTGGTCATGATGATGGTGATGCCTTGGGGGATGTTTTCATTTGGGGTGAAGGCACAGGTGATGCTGTACTGGGTGGTGGGGCTCACCTAGTTGGGAGTGATCTTGGTGTCAAAATGGATTCTCTGTTGCCCAAAGCCTTGGAATCGGCAGTTGTTCTTGATGTTCAGAATATTGCTTGTGGTGGAAAACATGCCGCCTTAGTTACCAAACAAGGTGAAATTTTTTCCTGGGGGGAAGAATCAGGAGGAAGGCTTGGGCATGGAGTTGATTCAGATGTTCCCCATCCAAAGCTTATTGAATCTCTAAGTAATACAAATATTGAACTTGTAGCTTGTGGGGAGTATCATACATGTGCTGTGACACTTTCTGGTGATCTTTATACATGGGGTGATGGCACTTACAATTATGGTCTTCTAGGGCATGGAAATCAGGTTAGTCACTGGGTTCCGAAAAGAGTAAATGGCCCTTTGGAGGGCATACATGTTTCATCTATTTCCTGTGGTCCATGGCACACTGCTGTGGTAACCTCTTCTGGGCAATTATTTACCTTTGGAGATGGTACATTTGGTGTTCTGGGTCATGGAGACCGAAAAAGTGTTTCCTTGCCTAGAGAAATAGAGTCCTTGAAGGGTCTTCGTACTGTTCAGGCTGCTTGTGGTGTTTGGCATACTGCCGCTATTGTGGAGGTCATGATTGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGCAGCTGTTTACATGGGGTGATGGGGACAAAGGTCGACTTGGGCATGGTGACAAGGAATCAAAACTTGTTCCAACCTGTGTTGTGGCTCTTGTTGAACCTAATTTTTGTCAAGTGACATGTGGTCATAGTATGACCGTTGCACTTTCTCGAGCAGGACATGTCTATACAATGGGCAGTTGTGTCTATGGCCAGTTAGGAAATACTCAAGCTGATGGGAAGCTACCAACCCGTGTAGAAGGAAAGCTTTCGAAGAGTTTTGTGGAAGAGATAGCTTGTGGTGCATATCATGTTGCAGTTTTAACTTCAAGGACTGAAGTTTTCACGTGGGGGAAGGGTGCTAATGGTCGTTTAGGTCATGGGGATACTAACGACAGAAGCACCCCAACATTAGTAGAAGCTCTGAAAGACAAACAAGTAAAAAGTATTGCTTGTGGTACAAATTTCACAGCAGCTATATGCCTGCATAAGTGGTTATGTGGTGTTGACCAGTCTATGTGTTCAGGCTGCCGCGTTCCATTCAATTTCAAAAGGAAACGCCACAATTGTTATAACTGTGGACTTGTTTTTTGTCATTCATGCAGTAGTAAGAAATCTGTCAAGGCTTCAATGGCACCAAACCCCAACAAACCTTATCGTGTCTGTGATAATTGTTTTAATAAAATAAGAAAAACAACCGAAACTGATTCTTCATCTCAGTCTTCTATGAGCAGAAGAGGAAGTCTTAATCAGGGGTCACTTGAGTTTATTGGTAAGGATGACAAATTGGATTCCAGATCTCATAATCAACTTGCCAGATTTTCTTCAATAGAATCCTTGAAACAAGTGGACAGCAGATCTTCGAAGAAAAACAAAAAATTGGAATTCAACAGTAGCCGTGTCTCACCTGCTCCAAATGGTGGTTCACAGTGGGGAGCAATGAATATTTCAAAATCTTTTAATCCTGTTTTTGGATCATCAAAGAAGTTTTTTTCGGCTTCTGTTCCTGGATCTAGAATTGTTTCACGAGCAACATCCCCAATATCTAGACGACCTAGTCCACCTCGTTCAACTACTCCAACCCCTACAGTAGGGGGACTTTCATCTCCAAAGATAGTTGTGGATGATGCTAAGAGAACCAATGATAACCTCAGTCAGGAGGTTATTAAATTAAGATCACAGGTGGAAAACCTGACTCGTAAAGCCCAGCTTCAAGAAGTGGAGTTGGAAAGAACAACTAAACAGTTAAAAGAAGCAATAGCAATTGCAAGCGAAGAAACTGCCAAATGCAAAGCAGCAAAGGAAGTGATTAAGTCTCTTACTGCTCAGTTGAAGGACATGGCCGAGAGGTTGCCTGTGGGAGTGTCTAGAACTGTCCGATCACCATCCTCTCTTGCTTCCTTTGGTCCAATTCCTGGTTCCAATGACCTTAACAATGCTTCCTTTGATCGATTGAATATTCAAGCAACAAGCCCAGAATCAGACTCAACCGGATCCAATAACCAGTTACTTGCAAATGGATCAAGCACCATCATCAACAGGAGTGCAGGTCACATTAAACACAGTCAGTCGGATGCTACTAGCACAGGTCACATTAAACATGGCCAATCAGATGCAACTAGTAGAAGCAAAACAAAGGATAATGAAACTGAATGGGTTGAGCAAGATGAACCTGGTGTATATATTACTCTCACCTCCCTACCAGGAGGTGTAATAGATCTTAAAAGAGTTCGCTTCAGTCGGAAACGGTTTAGTGAGAAACAAGCAGAACAATGGTGGGCCGAGAATAGAGGAAGAGTATATGAACAGTACAATGTGCGGACGATTGACAAGTCCACAATTGGTGTTGGGAGTGAGGACCTTGCTCATTGA 3357 0.429 MSRTDTMTTTSDLNRTGPVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKSLKLTNVSRIISGQRTPIFQRYPRPEKEYQSFSLMYNDRSLDLICKDKDEAEVWFSGLKALISRSRHRKWKPESRSDGILSEANSPRTYTRRSSPLNSPFGSNESLPKDSGDHLRLHSPYESPPKNGLDKAFSDVMYYPIPPMGFFPPDSVSGSLHSVSSGGSDSMHGQMKTMPMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDAVLGGGAHLVGSDLGVKMDSLLPKALESAVVLDVQNIACGGKHAALVTKQGEIFSWGEESGGRLGHGVDSDVPHPKLIESLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSSGQLFTFGDGTFGVLGHGDRKSVSLPREIESLKGLRTVQAACGVWHTAAIVEVMIGNSSSSNCSSGQLFTWGDGDKGRLGHGDKESKLVPTCVVALVEPNFCQVTCGHSMTVALSRAGHVYTMGSCVYGQLGNTQADGKLPTRVEGKLSKSFVEEIACGAYHVAVLTSRTEVFTWGKGANGRLGHGDTNDRSTPTLVEALKDKQVKSIACGTNFTAAICLHKWLCGVDQSMCSGCRVPFNFKRKRHNCYNCGLVFCHSCSSKKSVKASMAPNPNKPYRVCDNCFNKIRKTTETDSSSQSSMSRRGSLNQGSLEFIGKDDKLDSRSHNQLARFSSIESLKQVDSRSSKKNKKLEFNSSRVSPAPNGGSQWGAMNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTVGGLSSPKIVVDDAKRTNDNLSQEVIKLRSQVENLTRKAQLQEVELERTTKQLKEAIAIASEETAKCKAAKEVIKSLTAQLKDMAERLPVGVSRTVRSPSSLASFGPIPGSNDLNNASFDRLNIQATSPESDSTGSNNQLLANGSSTIINRSAGHIKHSQSDATSTGHIKHGQSDATSRSKTKDNETEWVEQDEPGVYITLTSLPGGVIDLKRVRFSRKRFSEKQAEQWWAENRGRVYEQYNVRTIDKSTIGVGSEDLAH* 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02765 1118 ProSiteProfiles BRX domain profile. 1045 1100 IPR013591 -
Lapu6g02765 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 503 554 IPR000408 -
Lapu6g02765 1118 MobiDBLite consensus disorder prediction 1013 1031 - -
Lapu6g02765 1118 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 477 487 IPR000408 -
Lapu6g02765 1118 Pfam Transcription factor regulating root and shoot growth via Pin3 1044 1099 IPR013591 -
Lapu6g02765 1118 Pfam Pleckstrin homology domain 24 130 IPR001849 -
Lapu6g02765 1118 MobiDBLite consensus disorder prediction 146 173 - -
Lapu6g02765 1118 Pfam FYVE zinc finger 660 725 IPR000306 GO:0046872
Lapu6g02765 1118 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 318 328 IPR000408 -
Lapu6g02765 1118 PRINTS Chromosome condensation regulator RCC1 signature 334 350 IPR000408 -
Lapu6g02765 1118 PRINTS Chromosome condensation regulator RCC1 signature 544 562 IPR000408 -
Lapu6g02765 1118 PRINTS Chromosome condensation regulator RCC1 signature 425 441 IPR000408 -
Lapu6g02765 1118 PRINTS Chromosome condensation regulator RCC1 signature 602 623 IPR000408 -
Lapu6g02765 1118 PRINTS Chromosome condensation regulator RCC1 signature 315 328 IPR000408 -
Lapu6g02765 1118 PRINTS Chromosome condensation regulator RCC1 signature 441 455 IPR000408 -
Lapu6g02765 1118 PRINTS Chromosome condensation regulator RCC1 signature 384 400 IPR000408 -
Lapu6g02765 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 332 383 IPR000408 -
Lapu6g02765 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 384 438 IPR000408 -
Lapu6g02765 1118 FunFam Putative E3 ubiquitin-protein ligase HERC1 665 733 - -
Lapu6g02765 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 439 490 IPR000408 -
Lapu6g02765 1118 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 425 435 IPR000408 -
Lapu6g02765 1118 MobiDBLite consensus disorder prediction 792 808 - -
Lapu6g02765 1118 Coils Coil 869 945 - -
Lapu6g02765 1118 FunFam PH, RCC1 and FYVE domains-containing protein 1 493 664 - -
Lapu6g02765 1118 SUPERFAMILY FYVE/PHD zinc finger 660 730 IPR011011 -
Lapu6g02765 1118 Gene3D - 22 139 IPR011993 -
Lapu6g02765 1118 MobiDBLite consensus disorder prediction 774 808 - -
Lapu6g02765 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 608 655 IPR000408 -
Lapu6g02765 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 502 551 IPR000408 -
Lapu6g02765 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 438 487 IPR000408 -
Lapu6g02765 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 383 435 IPR000408 -
Lapu6g02765 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 332 380 IPR000408 -
Lapu6g02765 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 555 603 IPR000408 -
Lapu6g02765 1118 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 663 725 IPR017455 -
Lapu6g02765 1118 CDD FYVE_like_SF 668 721 - -
Lapu6g02765 1118 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 668 737 IPR013083 -
Lapu6g02765 1118 Pfam Transcription factor BRX N-terminal domain 920 953 IPR027988 -
Lapu6g02765 1118 SUPERFAMILY RCC1/BLIP-II 270 660 IPR009091 -
Lapu6g02765 1118 SMART fyve_4 657 726 IPR000306 GO:0046872
Lapu6g02765 1118 FunFam PH, RCC1 and FYVE domains-containing protein 1 241 492 - -
Lapu6g02765 1118 MobiDBLite consensus disorder prediction 1013 1047 - -
Lapu6g02765 1118 Pfam Unstructured region between BRX_N and BRX domain 962 1023 - -
Lapu6g02765 1118 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 66 941 - -
Lapu6g02765 1118 Gene3D - 500 667 IPR009091 -
Lapu6g02765 1118 Gene3D - 248 499 IPR009091 -
Lapu6g02765 1118 MobiDBLite consensus disorder prediction 837 867 - -
Lapu6g02765 1118 CDD PH_PLC_plant-like 21 131 - -
Lapu6g02765 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 607 658 IPR000408 -
Lapu6g02765 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 270 331 IPR000408 -
Lapu6g02765 1118 SUPERFAMILY PH domain-like 22 130 - -
Lapu6g02765 1118 MobiDBLite consensus disorder prediction 141 193 - -
Lapu6g02765 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 555 606 IPR000408 -
Lapu6g02765 1118 MobiDBLite consensus disorder prediction 1032 1047 - -
Lapu6g02765 1118 MobiDBLite consensus disorder prediction 955 974 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02765 Lapu-Chr6 29238898 29252298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02765 929 1109 Major Intrinsic Protein MIP AT1G31880 31.606 4.39e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02765 - - var:108342748 2080.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02765 6 29238898 29252298 Lapu6g02765 6 29238898 29252298 ECH