Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02758 ATGGAACGTAGTGGTGGAATGGTAACTGGGTCGCATGAAAGGAATGAACTTGTTAGAGTTAGACAAAGTTCTGATAGTGGGTCTAAACCCTTGAAGAATTTGAATGGTCAGATTTGTCAAATATGTGGTGATACCATTGGATTAGCGGCTACCGGTGATGTCTTTGTTGCTTGTCATGAGTGTGGCTTCCCACTTTGTCATTCTTGTTACGAGTATGAGCTGAAAAATGCGAGCCAATCTTGTCCACAGTGCAAGACTAGGTTCACAAGTCACCAAGAGGGTGCTGGAGGGGAGGGTGATGATGATGATGAAGACGATGCTGATGATCTAGATAACGAGATCAACTATGGCCAAGGAAACAATTCCAAGGCAGGGATGCAATGGGAAGAAGATGCTGACTTCTCTTCATCTTCTGGACATGATTCTCAAATACCAAATCCCCATCTAGCAAACGGGCAACCGATGTCTGGTGATATTCCATCTGCTACTTCCGATGCTCAATCTATGCAAACTACATCAGGTCCTATGGTTACTACAAAGCAACCAGGTCCTGAAAGCGACGAAGAGATAAGGAGAGTGCCAGAGATTGGAGGTGAAAGTGCTGGAACTTCGGCCTCTCGGCCAGATGCCGGTTCAAATGCTGGTACAGAACGTGTTCAGGGGACAGGAGAGGGTCAGAAGAAGAGAGGGAGAAGCCCAGCTGATAAAGAAAGCAAACGGCTAAAGAGGCTATTGAGGAACAGAGTTTCTGCTCAACAAGCAAGGGAGAGGAAAAAGGCATACTTGATTGATTTGGAAACAAGAGTCAAAGACTTAGAGAAGAAGAATTCAGAACTCAAGGAAAGACTTTCTACTTTGCAGAATGAGAACCAAATGCTTAGACAAATATTGAAGAACACAACAGCGAGCAGGAGAGGGAGCAATAGTGGTACCAATAATGCTGAATGA 948 0.4473 MERSGGMVTGSHERNELVRVRQSSDSGSKPLKNLNGQICQICGDTIGLAATGDVFVACHECGFPLCHSCYEYELKNASQSCPQCKTRFTSHQEGAGGEGDDDDEDDADDLDNEINYGQGNNSKAGMQWEEDADFSSSSGHDSQIPNPHLANGQPMSGDIPSATSDAQSMQTTSGPMVTTKQPGPESDEEIRRVPEIGGESAGTSASRPDAGSNAGTERVQGTGEGQKKRGRSPADKESKRLKRLLRNRVSAQQARERKKAYLIDLETRVKDLEKKNSELKERLSTLQNENQMLRQILKNTTASRRGSNSGTNNAE* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02758 315 MobiDBLite consensus disorder prediction 1 20 - -
Lapu6g02758 315 Coils Coil 234 303 - -
Lapu6g02758 315 Gene3D Single helix bin 258 299 - -
Lapu6g02758 315 CDD bZIP_HY5-like 240 291 - -
Lapu6g02758 315 FunFam Cellulose synthase A catalytic subunit 1 [UDP-forming] 21 113 - -
Lapu6g02758 315 MobiDBLite consensus disorder prediction 1 29 - -
Lapu6g02758 315 MobiDBLite consensus disorder prediction 222 256 - -
Lapu6g02758 315 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 160 312 IPR044280 GO:0000981|GO:0045944
Lapu6g02758 315 MobiDBLite consensus disorder prediction 114 180 - -
Lapu6g02758 315 Pfam Zinc-binding RING-finger 29 105 IPR027934 -
Lapu6g02758 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 113 IPR013083 -
Lapu6g02758 315 MobiDBLite consensus disorder prediction 97 112 - -
Lapu6g02758 315 SMART brlzneu 235 299 IPR004827 GO:0003700|GO:0006355
Lapu6g02758 315 FunFam Transcription factor HY5 258 299 - -
Lapu6g02758 315 SUPERFAMILY Leucine zipper domain 239 297 IPR046347 GO:0003700|GO:0006355
Lapu6g02758 315 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Lapu6g02758 315 CDD mRING-HC-C4C4_CesA 37 87 - -
Lapu6g02758 315 MobiDBLite consensus disorder prediction 205 220 - -
Lapu6g02758 315 SUPERFAMILY RING/U-box 24 109 - -
Lapu6g02758 315 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 242 257 IPR004827 GO:0003700|GO:0006355
Lapu6g02758 315 MobiDBLite consensus disorder prediction 89 256 - -
Lapu6g02758 315 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 237 300 IPR004827 GO:0003700|GO:0006355
Lapu6g02758 315 Pfam bZIP transcription factor 236 297 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02758 Lapu-Chr6 29167586 29171566 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02758 7 184 Glycosyltransferase AT2G25540 52.809 1.10e-55 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lapu6g02758 zf-UDP 2.2e-35 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02758 K10999 - gmx:548004 553.903