Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02755 ATGACGAGTGTGATACTCAGAAGATCCTCCTCCGTAATCTCGCGCCGCTTCTTCGCCACTCTCGCCTCCGTCGAACCTCTTCCGCACCACCGCCGGCTCACCGCGCTCAGGCACGATGGCTCCAGCGACGGAGTTGGAGTCAGATCCTTGCACGCGAAATCCGGACCGTTGAACTTCCGCTCGTCGCCGGTTTCTCACGCGGCGCAGTTCGCCGTGGAGCGCGACTACTCCAACGAAGAGGTAGGTTGGGGCACGAACAACGACGAAGGACTCGAGATCGCGAAGCTCGGGATCTCAACGGAGATCGTGGATGCTTTGGCCAAGAAAGGGATCACAAAGCTGTTTCCTATTCAGAGAGCTGTGCTAGAACCTGCAACGCAGGGGCGAGATATGATTGGTCGAGCTAGGACGGGAACTGGGAAAACTCTTGCATTTGGGATTCCCATCTTGGACAGGATTATTCAGCTCAATGCTAAGCATGGGCGAGGAAAAGATCCTTTGGCTATGGTTTTGGCTCCAACTAGAGAACTTGCACGGCAGGTTGAGAAGGAATTCAATGAGGCTGCACCTAACCTGGAGACGATCTGTCTTTATGGGGGTATGCCCATCCAGCAACAAATGAGGCAGCTTAATTATGGTGTAGATATTGCAGTAGGCACACCTGGTCGAATTATTGATCTTCTCAATAGGAGGGCACTGAATTTGAAGGATGTCAAGTTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTAGGATTTCAAGAAGCTGTGGAGAAGATCTTGGAGAGTTTGTCTCCAAATCGTCAGACTCTTATGTTCTCAGCAACAATGCCATCTTGGATAAAGAGTATTACCCGCAATTACCTAAACAACCCCCTTACCATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCACTGTACTCTATTGCATCTGATGTTCGCACTAAAGCAGGGATTCTCGCACCTCTGATAACAGAACATGCAAATGGGGGAAAGTGTATTGTTTTCACTCAAACCAAACGTGATGCGGATCGATTATCATATGTAATGGCAAAAAGCCTTAAATGTGAGGCTTTGCATGGCGATATTTCACAAACTCAGAGGGAAAGGACTCTTGCAGGTTTCAGAAACAACCATTTCAATGTTTTAGTGGCAACTGATGTTGCATCACGTGGCCTTGATGTTCCAAATGTGGATCTTGTAATACATTATGATCTTCCCAGTTCATCAGAGATATTTGTTCACCGATCTGGACGAACGGGCCGTGCTGGGAAGAAAGGAACTGCTATTCTTGTTTACTCAGAAGATCAATTCAGGACTGTGAAGACTATTGAGCGTGATGTTGGATGCAAATTTACAGAGCTAGCAAAGATTAATGTTCCAAGTGGATCAGTAGACATGTTTGGTGGAATGGGTGGTGGTCGATTTGGTTCTTCAGGAGGTATGAGGGATCGTCAATCTGGAGGTACAGGTTTTGGTCGCAGTCCTGGATTTGGCCGTTCTGGCAGTTACCCTAACTCCGGATTTGGCCGATCTAGCTATGGAAATTCCAATGAGACAGGAAGATTTGGAGGACCAAATTCTAGCCGTTTTGGCAGCCCTGGTTCAAGTCTGTCAGGAGGGGGTTTCGGTGGATTTGGTAGTTCGGATCGATCTGGAGGTTTTGGAGATTTTGGGAGGGGTCAATCTGGTGCATTTGGTGATAGAAAGTCAAGCCAGAACAGCACCTTTGGTGGTTCACGTGACAGTGGTTTCGGTGCTTTTGGGGATAACCTAAATAGTGACAGTTATAATAGACGAAAGGCTTTTTAA 1830 0.4732 MTSVILRRSSSVISRRFFATLASVEPLPHHRRLTALRHDGSSDGVGVRSLHAKSGPLNFRSSPVSHAAQFAVERDYSNEEVGWGTNNDEGLEIAKLGISTEIVDALAKKGITKLFPIQRAVLEPATQGRDMIGRARTGTGKTLAFGIPILDRIIQLNAKHGRGKDPLAMVLAPTRELARQVEKEFNEAAPNLETICLYGGMPIQQQMRQLNYGVDIAVGTPGRIIDLLNRRALNLKDVKFVVLDEADQMLQVGFQEAVEKILESLSPNRQTLMFSATMPSWIKSITRNYLNNPLTIDLVGDSDQKLADGISLYSIASDVRTKAGILAPLITEHANGGKCIVFTQTKRDADRLSYVMAKSLKCEALHGDISQTQRERTLAGFRNNHFNVLVATDVASRGLDVPNVDLVIHYDLPSSSEIFVHRSGRTGRAGKKGTAILVYSEDQFRTVKTIERDVGCKFTELAKINVPSGSVDMFGGMGGGRFGSSGGMRDRQSGGTGFGRSPGFGRSGSYPNSGFGRSSYGNSNETGRFGGPNSSRFGSPGSSLSGGGFGGFGSSDRSGGFGDFGRGQSGAFGDRKSSQNSTFGGSRDSGFGAFGDNLNSDSYNRRKAF* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02755 609 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 91 119 IPR014014 GO:0003724
Lapu6g02755 609 Pfam Helicase conserved C-terminal domain 325 430 IPR001650 -
Lapu6g02755 609 SMART helicmild6 350 430 IPR001650 -
Lapu6g02755 609 FunFam ATP-dependent RNA helicase RhlE 84 299 - -
Lapu6g02755 609 SMART ultradead3 110 313 IPR014001 -
Lapu6g02755 609 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 122 296 IPR014001 -
Lapu6g02755 609 Pfam DEAD/DEAH box helicase 115 283 IPR011545 GO:0003676|GO:0005524
Lapu6g02755 609 Gene3D - 314 470 IPR027417 -
Lapu6g02755 609 MobiDBLite consensus disorder prediction 506 542 - -
Lapu6g02755 609 MobiDBLite consensus disorder prediction 572 609 - -
Lapu6g02755 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 451 IPR027417 -
Lapu6g02755 609 MobiDBLite consensus disorder prediction 482 609 - -
Lapu6g02755 609 Gene3D - 92 300 IPR027417 -
Lapu6g02755 609 CDD SF2_C_DEAD 322 439 - -
Lapu6g02755 609 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 92 463 - -
Lapu6g02755 609 CDD DEADc 102 297 - -
Lapu6g02755 609 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 325 474 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02755 Lapu-Chr6 29085898 29092378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02755 96 461 Eukaryotic Initiation Factors Gene Family AT3G19760 32.432 1.61e-63 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02755 - - gmx:100815635 881.322