Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02748 ATGAACAACAGTCTTCCTGACTGGAATTTTGGGAGTGATTCCTGTGTCACCACCAATCAAAAGAAGCCTATGGGGGTGGACCAAGAACTTGTGGAGCTCCTGTGGCAAAATGGCCAGGTAGTGTTGCACAGCCAAACACATAGAAAACCAGTTGTGAATTCGATCTCACCTAGACCGCTTCAGAGAGCTTTTCAATCAACATTAAGGACTAGTGAGCCTGTTGGAATATCAAGTAACTTGATTCAAGATGATGAGACAGTCTCATGGATCCAATACCCTATTGAGGATCCATTGGAACATGAATTCTGTTCAAACCTTTTATCTGAACTGCCACAGTGTGATGTTGAGTCCTATAAGCAAATCAAGCCATTTGAAGTGGGAAAGTTTACCAAATTGGACGCTTCGAGTGCCCCCCATGTGACTGTAAGTTCACAATCACCTACTATGAAATCCTCCTCTTTTCAGGAATTCTCAGGGATTCCTATACCTGCTCCAAGATTCCATGTTTCTGATTCACCTCAGAAAAATAATAATGACTTGAGTGGACCGTGTAAAGTCCAAAACTTCTCTCACTTTTCACCACCCCTTAATGTTTCTTCAGCATTGCCTAATGCTCATTTTAGAGACAAAATTACTGGTAACATGTCAAAAAATGAGGTTAGAGAGTGCTCATTGATGACAGTTGGATCAAGTTACTGTGGTAGCAATCACATGACCCAAGATCCAGATGCAAGCAGGGCATCAAGCAATGGTGTCTGGACTACTACTTTATCTGTTGAGCCTGAAGCTGTCAGAGATGATGTGCCGAGAACAATTCCTCAGAGTGAGAAAGGGAAATCAGAGATGCTTGAACCAGCTGCAACTTCATCTTCTGGTGGCTCAGGTAGTAGTCTTGGAAAAACTTGTTCCTTATCTACCAGAAACCAGAGCCAGAAAAGAAAAACAGTAGATGTGGAAGAATCTGAGGAGCATAGTGAGGACACAGAACTTAAATCACCAGTTGGAAACAAGACATCTCAACGGACAGCGTCGGCTCGAAGGAACCGTGCTGCTGAAGTGCACAATCTATCAGAAAGAAGAAGGAGAGATAGAATCAATGAGAAGATGAAAGCATTGCAACAACTAATACCTCACAGTAGCAAGACAGACAAAGCATCAATGTTGGAAGAGGCCATCGAATATTTGAAATCACTTCAGTTACAACTTCAGCTAATGTGGATGGGATCTGGCATGGCACCAATGATGTTTCCAGGAATTCAGCACTATATGTCTCAAATGGGTATGGGAATGGCTTCACCTCCTTTCCCTCCTATTCAGAGTCCGATGCAATTACCACGAGTGCCACTTGATCAGCCTGTATCTGCATCTCAGGCACCAAACCAGACACTGATGTGTCAAAATCCTATGTTGGGTGCCTTTAATTACCAAAATCAGATGCAAAATCCAGCTCTTTCAGAGCAATATGCACGTTACATGGGCTATCATCTTATGCAAAATGCTTCTCAGCCAATGAATGTATTCAGATATGGCCCCCAGGCAGTACAACATAGTCAAACAATGATTACACCCAGCAACAGCAGTGGAAACATGAGTGGAGCAGCAAATATTGATGAGGCTGTGAGTGGCAAAATGGGTAAGCCACTTGCATAG 1650 0.4303 MNNSLPDWNFGSDSCVTTNQKKPMGVDQELVELLWQNGQVVLHSQTHRKPVVNSISPRPLQRAFQSTLRTSEPVGISSNLIQDDETVSWIQYPIEDPLEHEFCSNLLSELPQCDVESYKQIKPFEVGKFTKLDASSAPHVTVSSQSPTMKSSSFQEFSGIPIPAPRFHVSDSPQKNNNDLSGPCKVQNFSHFSPPLNVSSALPNAHFRDKITGNMSKNEVRECSLMTVGSSYCGSNHMTQDPDASRASSNGVWTTTLSVEPEAVRDDVPRTIPQSEKGKSEMLEPAATSSSGGSGSSLGKTCSLSTRNQSQKRKTVDVEESEEHSEDTELKSPVGNKTSQRTASARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQLMWMGSGMAPMMFPGIQHYMSQMGMGMASPPFPPIQSPMQLPRVPLDQPVSASQAPNQTLMCQNPMLGAFNYQNQMQNPALSEQYARYMGYHLMQNASQPMNVFRYGPQAVQHSQTMITPSNSSGNMSGAANIDEAVSGKMGKPLA* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02748 549 SMART finulus 355 404 IPR011598 GO:0046983
Lapu6g02748 549 Coils Coil 355 375 - -
Lapu6g02748 549 Gene3D - 344 405 IPR036638 GO:0046983
Lapu6g02748 549 PANTHER TRANSCRIPTION FACTOR PIF3 18 512 IPR044273 GO:0003700|GO:0006355
Lapu6g02748 549 FunFam Basic helix-loop-helix transcription factor 344 407 - -
Lapu6g02748 549 MobiDBLite consensus disorder prediction 332 346 - -
Lapu6g02748 549 MobiDBLite consensus disorder prediction 312 331 - -
Lapu6g02748 549 MobiDBLite consensus disorder prediction 257 352 - -
Lapu6g02748 549 CDD bHLH_AtPIF_like 349 412 IPR047265 -
Lapu6g02748 549 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 349 398 IPR011598 GO:0046983
Lapu6g02748 549 Pfam Helix-loop-helix DNA-binding domain 353 399 IPR011598 GO:0046983
Lapu6g02748 549 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 352 427 IPR036638 GO:0046983
Lapu6g02748 549 MobiDBLite consensus disorder prediction 519 549 - -
Lapu6g02748 549 MobiDBLite consensus disorder prediction 519 534 - -
Lapu6g02748 549 MobiDBLite consensus disorder prediction 284 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02748 Lapu-Chr6 28849371 28855231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02748 1 99 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G59060 37.963 9.84e-13 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu6g02748 HLH 1.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02748 K16189 - gmx:100784531 937.947