Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02730 ACTTCATTTGCACTCTGCATTCACACTCTCAACTCGCCTTTCACTGAGAATCATAAAATGGTGCCTAAGTTTCTCATTGCAATATTAACTTCATCATCATCGTCGCTCAAACGCTCTAACAGCACCCATTTCCTCTTGAGTTCTCCGCTGCAACACAAACAGTCTGCCACTCTCATTTTCTTCAATTCCTTCACTTCACCCACCTCTTCTGATTCTGAATCAGATGGAAACCACAACAAAGGCGACACCTTTACCGTGTCTTACCTCATCAACTCATGTGGGGTGTCTCCCAAAAAGGCCAGGGAACTCTCCAACAAAGTCAATTTGAAAACCCCACATGGCCCAAATGCTGTTCTTGATCTTCTCCATAACTATGGGTTCTCAAAAACCCACCTTACAAAGCTTGTGGAGAAACATCCCTCTGTGCTACTTACAAAGGCAGAGATTACCCTTTTGCCTAAACTCAAGTTCTACAGTTCTATTGGGGTTTCCAACGCTCACATGCCCGAGATCCTAATTGCTTTCGGCGGCCTCTTGTTCAGAAGCTTGGAGAAATGTCTCATCCCGCGGTACCAGATCCTAGTAAGTGTTCTCCGTGACGATCAGGAAGTTGTTAGAGCTTTAACAAAAAACCCATTTAGTTTTGCAAGTGGTATCATGACGAATGATTTGATTCAAAACATTAAGTTTTTGAGGCAATCTGGTGTTCCCCAAGCATCCATCTCTTTCCTGATGATCCACGGTGGGAGGTCTGCCTACCTCAAGCATTCAAAGTTTGTGGAAGCTGTCAACAATGTTAAGGAAGTTGGGTTTAATCCTCTGAGAATAAATTTTATGAGTGCTATTCAAATGCTTCTAACTAGGAGGAAAGCAGTAATGGAATCGAAGTTTGAGAATTATGGGAGGTGGGGCTGGAACCGCGAACTGGCTCTTCAAGCATTTAGGAAGTTTCCGAAATTTATGCAGTTGTCAGAGGAGACGTTTAACAGAAAAATGAGTTTCCTAGTGAAGGATATGGGCTGGCCATCAGAACGCATTGCTGAACATCCTCAAGTTGTAGCATACAGCTTGGAGAAGAGGATTATCCCTAGATTTTCGGTAATCAAAATCTTGATATCAAAAGGTCTGCTTGAGAATAATATATCCTTTAGTACCATGATGTGCCTTAGCGAGAAAAAGTTTGTAGAGAATTTTGTGGTCAGTTTTCAGAATGATTTGCCTCTCTTACTAGATGTCTATAGAGGTGTTATTAATCCTTCAAACATAATGTAG 1272 0.419 TSFALCIHTLNSPFTENHKMVPKFLIAILTSSSSSLKRSNSTHFLLSSPLQHKQSATLIFFNSFTSPTSSDSESDGNHNKGDTFTVSYLINSCGVSPKKARELSNKVNLKTPHGPNAVLDLLHNYGFSKTHLTKLVEKHPSVLLTKAEITLLPKLKFYSSIGVSNAHMPEILIAFGGLLFRSLEKCLIPRYQILVSVLRDDQEVVRALTKNPFSFASGIMTNDLIQNIKFLRQSGVPQASISFLMIHGGRSAYLKHSKFVEAVNNVKEVGFNPLRINFMSAIQMLLTRRKAVMESKFENYGRWGWNRELALQAFRKFPKFMQLSEETFNRKMSFLVKDMGWPSERIAEHPQVVAYSLEKRIIPRFSVIKILISKGLLENNISFSTMMCLSEKKFVENFVVSFQNDLPLLLDVYRGVINPSNIM* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02730 423 Gene3D Transcription termination factor 3, mitochondrial 178 405 IPR038538 -
Lapu6g02730 423 PANTHER CGI-12 PROTEIN-RELATED 81 400 IPR003690 GO:0003690|GO:0006355
Lapu6g02730 423 FunFam Mitochondrial transcription termination factor-like 183 406 - -
Lapu6g02730 423 Pfam mTERF 119 272 IPR003690 GO:0003690|GO:0006355
Lapu6g02730 423 Pfam mTERF 290 394 IPR003690 GO:0003690|GO:0006355
Lapu6g02730 423 SMART mt_12 205 237 IPR003690 GO:0003690|GO:0006355
Lapu6g02730 423 SMART mt_12 133 164 IPR003690 GO:0003690|GO:0006355
Lapu6g02730 423 SMART mt_12 169 200 IPR003690 GO:0003690|GO:0006355
Lapu6g02730 423 SMART mt_12 311 342 IPR003690 GO:0003690|GO:0006355
Lapu6g02730 423 SMART mt_12 343 377 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02730 Lapu-Chr6 28347872 28349302 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lapu6g02730 mTERF 1.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02730 K15032 - gmx:100786641 518.079