Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02729 ATGGTGCCTAAGTTTCTTATTGCAATTTTAACTTCATCATCATCACTCAAACGCTCCAACAGCAGCCATTTCCTCTTGAGTTCTCCGCTGCAACACAAACACTCTGCCCCGCTCATTTTCTTCAATTCCTTCACTTCACCCACCTCTTCTGATTCTGAATCAGATGGAAACCACAACAAAGGCGACATTTTTACTGTGTCTTACCTCATCAACTCATGTGGGGTGTCCCCCAAAAAGGCCACCGAACTCTCCAAGAAGGTCAATTTGAAAACCCCACATGGCCCAAATGCTGTTCTTGATCTTCTCCATAACTATGGGTTCTCAAAAACCCACCTTACAAAGCTTGTGGAGAAACATCCCTCTGTGCTACTTACAAAGGCAGAGAATACCCTTTTGCCTAAACTCAAGTTCTACAGTTCTATTGGGGTTTCCAACGGTGACATGCCCAAGATCCTAATTGCTTTCGGCCGTCTCTTGTTCAGAAGCTTGGAGAAATGTCTCATCCCGCAGTACCAGATCCTAGTACGTGTTCTCCGTGACGATCAGGAAGTTGTTAGAGCTTTAACAAAAAACCCATTTAGTTTTGCAAGTGGTATCATGACGAATGATTTGATTCAAAACATTAAGTTTTTGAGGCAATCTGGTGTTCCCCAAGCATCCATCTCTTTCCTGATGATCCACGGTGGGAGGTCTGCCTACCTCAAGCATTCAAAGTTTGTGGAAGCTGTCAACAATGTTAAGGAAGTTGGGTTTAATCATCTGAGAATAAATTTTGTGAGTGCTATTCAAATTCTTCTGACAAGGAGGAAAGCAGTAACGGAATCGAAGTTTGAGAATTATCGGAGGTGGGGCTGGAACCGCGAACTGGCTCTTCAAGCATTTAGGAAATTTCCCAATTTTATGCAGTTGTCAGAGGAGACGTTTAACAGAAAAATGAGTTTCCTGGTGAAGGATATGGGCTGGCCATCAGAACGCATTGCTGAACATCCTCAAGTTGTAGCATACAGCTTGGAAAAGAGAATTATCCCTAGATTTTCGGTAATCAAAATCTTGAGATCAAAAGGTCTGCTTGAGAATAATGTATCCTTTAGTACCATTATGTGCCTTACTAAGAAAAAGTTTGTAGAGAATTTTGTGGTCAGTTTTCGGAATGATTTGCCTCTCTTACTAGATGTCTATAAAGGTCTTATCAATCCTTCAAATGTAATGTAG 1212 0.4167 MVPKFLIAILTSSSSLKRSNSSHFLLSSPLQHKHSAPLIFFNSFTSPTSSDSESDGNHNKGDIFTVSYLINSCGVSPKKATELSKKVNLKTPHGPNAVLDLLHNYGFSKTHLTKLVEKHPSVLLTKAENTLLPKLKFYSSIGVSNGDMPKILIAFGRLLFRSLEKCLIPQYQILVRVLRDDQEVVRALTKNPFSFASGIMTNDLIQNIKFLRQSGVPQASISFLMIHGGRSAYLKHSKFVEAVNNVKEVGFNHLRINFVSAIQILLTRRKAVTESKFENYRRWGWNRELALQAFRKFPNFMQLSEETFNRKMSFLVKDMGWPSERIAEHPQVVAYSLEKRIIPRFSVIKILRSKGLLENNVSFSTIMCLTKKKFVENFVVSFRNDLPLLLDVYKGLINPSNVM* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02729 403 Gene3D Transcription termination factor 3, mitochondrial 177 384 IPR038538 -
Lapu6g02729 403 PANTHER CGI-12 PROTEIN-RELATED 64 380 IPR003690 GO:0003690|GO:0006355
Lapu6g02729 403 Pfam mTERF 99 301 IPR003690 GO:0003690|GO:0006355
Lapu6g02729 403 Pfam mTERF 265 374 IPR003690 GO:0003690|GO:0006355
Lapu6g02729 403 SMART mt_12 323 357 IPR003690 GO:0003690|GO:0006355
Lapu6g02729 403 SMART mt_12 185 217 IPR003690 GO:0003690|GO:0006355
Lapu6g02729 403 SMART mt_12 149 180 IPR003690 GO:0003690|GO:0006355
Lapu6g02729 403 SMART mt_12 113 144 IPR003690 GO:0003690|GO:0006355
Lapu6g02729 403 SMART mt_12 291 322 IPR003690 GO:0003690|GO:0006355
Lapu6g02729 403 FunFam Mitochondrial transcription termination factor-like 163 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02729 Lapu-Chr6 28334380 28336407 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lapu6g02729 mTERF 1.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02729 K15032 - gmx:100775533 523.472