Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02717 ATGACTGAGAGGGATTGGCGCATCTTCAGAGAAGACTACAACATCTCCTACAAGGGTTCCAAGATTCCTCGCCCCATGAGGAGCTGGATCGAGAGCAAGTTGAGCCTGGAGGTCTTGAAGGCTGAGGAGAAGGCTGACTATAAAACCCCTTCTCCGATTCAGATGGCAGCCATTTCCCTTGGCTTGCAGCAGCGTGATGTCATTGGCATTGCCGAGACTAGTTCCGGGAAAACTACGGCGTTTGTGCTTCCCATGTTGAGTTACATCACCAGGCTTCCTCCCATGAGCGAGGACAACGAGGCTGAGGGTCCCTATGCTGTTGTCATGGCCCCTACTCGCGAGCTCACGCAACAGATCGAGGATGAGACTGTTAAGTTTGCGCAGTATTTGGGCATCAAGGTGGTGTCCATTGTTGGTGGACAATCCATTGAGGAGCAAGGATTTAAGATCAGGATAGCAAAGGAAAATGATGCCATGAAAAGATTGCTTCGACGTGTTGCAACAAAACTTGGAAAAGTTTTGGTAAAGAAGTTTACTTTACAAAATGTTTCTTAG 555 0.4829 MTERDWRIFREDYNISYKGSKIPRPMRSWIESKLSLEVLKAEEKADYKTPSPIQMAAISLGLQQRDVIGIAETSSGKTTAFVLPMLSYITRLPPMSEDNEAEGPYAVVMAPTRELTQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRIAKENDAMKRLLRRVATKLGKVLVKKFTLQNVS* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02717 184 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 19 153 - -
Lapu6g02717 184 SMART ultradead3 46 184 IPR014001 -
Lapu6g02717 184 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 149 IPR027417 -
Lapu6g02717 184 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 27 55 IPR014014 GO:0003724
Lapu6g02717 184 Gene3D - 1 170 IPR027417 -
Lapu6g02717 184 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 58 146 IPR014001 -
Lapu6g02717 184 Pfam DEAD/DEAH box helicase 52 151 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02717 Lapu-Chr6 28043095 28045676 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02717 47 145 Eukaryotic Initiation Factors Gene Family AT3G13920 37.374 6.07e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02717 K12858 - gmx:100799264 276.559