Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02716 ATGAATGCTAAAGTTCAAGACTCTGATGATACCAAGAAGGGTGAAGAAGTTGTGCTTCCTGGCTTTAGGTTTCACCCCACAGATGAAGAACTTGTTGGGTTTTATCTGCAGAGAAAGGTGGAAAAGAAGCCTCTTAAAATTGAACTCATCAAACAGGTTGATATCTACAAATATGATCCATGGGATCTTCCAAAGGTGAATTCATTTGGGGACAAGGAGTGGTATTTTTTCTGCATAAGAGGGAGGAAGTACAGGAACAGTGTGAGGCCAAACAGGGTAACAAGGTCAGGGTTCTGGAAAGCCACAGGAATAGACAAGTCCATATACTGTGTGAAGGAACCCCATGAATGCATTGGCCTGAAGAAGTCATTGGTGTACTATCGTGGAAGTGCAGGCAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGTCTTCCACCCAATGCAAAATCCTCCACCAACATTGCTAATGCTACCAATAATCTTCTTGAAGCTGAGGTGTGGACACTCTGCAGGATATTCAAACGCATCCCATCTTTCAAAAAGTACACTCCAAATTTGAAAGACTCAACACCCCTCACCAAATCCAACCCTGTGAATTCCAACACAAGCACCATAGATTCTGACAATTGCAAGCCATATTTGATCTGCAGAGACCCTGAGATGATGCAACAGCTAGAAAGAAAACCAGTATTTGGACAGGTTGATGAAAAGAAACACTTGTTTCTTGGGCAGTTTGGTCAACTACCTCATCTTCAAGCCCCATCAACTCCATACCCAAGTTTTTGGAACCAGAATGTTGAAGATTATGCATTTGCCAATGAGAATTGGGATGATCTGAGATCTGTGGTTCAGTTTGCCATTGATCCATCCTCGGTGTTTGATTGTACAGAAACACATATTCCACCCTACTTTTCTTAG 924 0.4232 MNAKVQDSDDTKKGEEVVLPGFRFHPTDEELVGFYLQRKVEKKPLKIELIKQVDIYKYDPWDLPKVNSFGDKEWYFFCIRGRKYRNSVRPNRVTRSGFWKATGIDKSIYCVKEPHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNAKSSTNIANATNNLLEAEVWTLCRIFKRIPSFKKYTPNLKDSTPLTKSNPVNSNTSTIDSDNCKPYLICRDPEMMQQLERKPVFGQVDEKKHLFLGQFGQLPHLQAPSTPYPSFWNQNVEDYAFANENWDDLRSVVQFAIDPSSVFDCTETHIPPYFS* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02716 307 Gene3D NAC domain 27 180 IPR036093 GO:0003677|GO:0006355
Lapu6g02716 307 ProSiteProfiles NAC domain profile. 18 177 IPR003441 GO:0003677|GO:0006355
Lapu6g02716 307 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 220 - -
Lapu6g02716 307 FunFam NAC domain-containing protein 35 27 180 - -
Lapu6g02716 307 Pfam No apical meristem (NAM) protein 20 146 IPR003441 GO:0003677|GO:0006355
Lapu6g02716 307 SUPERFAMILY NAC domain 14 176 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02716 Lapu-Chr6 28014785 28020136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02716 6 177 NAC Transcription Factor Family AT5G39820 58.919 2.54e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu6g02716 NAM 1.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02716 - - gmx:100819795 576.244