Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02682 ATGACGGAACTGAGTCAACTCGGCGATCGTGGTGCACTGGATGCATCATTGCTTGATCTAAGCCACGCCGGGAGCTTCCTGGCGCGATTCGCGGAGGCCCCGCATTATTACAGCGCGTTGTTCAACGCGCTTGGGGATGGTTTGGGTGCGGACAACCTGGAGAGGCACACCGTGGAGCAGCAGCTCTTGGGCTGGGAGATCAGGAACATGGTGGTCGTGGGCGGGCCGAAGAGGACCGAAGAGGTTAAGGTGGAGTGGTGGGCGGATTCCGGTGATTTATTGGACGAGGTTCGACTGCAGATTCGTGTGATTTTGTTTGGCATCATGTCGATGGGTGAGCGGAAGACTATCGACCTCGAACAGGGATGGGGTTTCATGCAGAAGGGCATCACCAAACTCAAGAACATTCTGGAAGGCCTACCCGACCCTCAAGAATGA 438 0.5616 MTELSQLGDRGALDASLLDLSHAGSFLARFAEAPHYYSALFNALGDGLGADNLERHTVEQQLLGWEIRNMVVVGGPKRTEEVKVEWWADSGDLLDEVRLQIRVILFGIMSMGERKTIDLEQGWGFMQKGITKLKNILEGLPDPQE* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02682 145 Pfam GRAS domain family 23 87 IPR005202 -
Lapu6g02682 145 ProSiteProfiles GRAS family profile. 1 145 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02682 Lapu-Chr6 27418934 27419453 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02682 19 87 GRAS Transcription Factor Family AT3G54220 66.667 5.87e-25 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lapu6g02682 GRAS 8.3e-14 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02682 - - pvu:PHAVU_011G024600g 124.79