LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu6g02677	ATGGACGCGCCACCATCCGCCGCCGGAGGACCGGCGCCGTTTCTTCTGAAGACCTACGACATGGTGGACGATTCCTCCACCAACGACATCGTTTCGTGGAGCTCATGCAACGCCAGTTTCGTCGTGTGGAATCCGCCCGAGTTCGCTCGCCTTCTTCTCCCGACCTATTTCAAGCACAACAACTTCTCCAGCTTCATCCGCCAGCTCAATACCTATGGTTTCCGAAAAATACATCCAGAGCGATGGGAATTTGCTAATGATGAGTTCGTGAAAGATCAGAAGCATCTTCTCAAGAATATACATCGTAGGAAACCTATCCACAGTCATAGTCATCCTCCGGGTTCTATTGTAGATCCAGAAAGAGCAGCATTTGAGGAAGAAATCGAGAAACTTTCACGTGAGAAAACTTCTCTTGAATCCAATATTCAAAACTTCAGACAACATCAGTCAACAGCAAAGCTTCAACTAGAAGATTTTCTGCAGCGGTTAGATGGTACTGAAAAAAGGCAGAAACAATTGCTGAACTTCTTTGAGAAGGCTCTTCAGAATCCTAGTTTTGTTGAACATCTTTCACGCAAAATTGAGTCCATGGATTTAGCGGCATATAATAAGAAGAGGCGATTGCCCCAAGTTGATCATGTTCAACCGGTTGCAGAAAGTAGCTTCGGGGACAGTCATAGCAATTTTAGAATGGAATTTGGAAATGTTTTCCATCAGGATTTCTCAAATAAACTCAGACTGGAATTGTCACCAGCTGTGTCAGATATGAACTTGGTATCACGTAGCACACAGAGTTCAAATGAAGATGGGGAAAGTCCACAGAAAAAACTGTCTGAAGTAGAACCAAAAGGACTGCAGACAAGAACAACGCTTACATTTGCACCTGAAACATTAGAACTCGCGGATACCGGGGCTTCTTTTACTTTTAAGATGGATTCATGTTTATCGCGAAAAGCAACAACCGCTGAGAACTCTAAACTGATATCTTTGGAGCCAAGTAGTGAAGAAGGCGATAGTCATATATCCTGCCAATTAAATTTAACTCTGGCATCTCATCCGCTGCAAGTAAACAGAAATTCATATTCAGCCAGATCACCCCAAATTGACTGTCAAGAAATTGGCAAATTAGCAGAATCGAGATTTTTTGCCAGTGGTAAAGAATCTGATAGTGGTGTGTCCTCAAACCAAAATGTAGCTGTTGAGGCTACCAATTTAGCTTCACCAAAGGAGGCTCCAAGTAACAACCCAATCAATCCAGCTCCTCCAGACAGAGTGAATGATGTTTTCTGGGAACAGTTTCTTACCGAAAGGCCAGGCTGTTCTGACAATGAAGAGGCAATATCCAACTACCGAGCTAACCCATATGATGAGCAAGATGATGGACGGTCAGTTCATGGAATCTCTAGAAACATTAAGAACATGGATCAACTCACACTTTGA	1440	0.4319	MDAPPSAAGGPAPFLLKTYDMVDDSSTNDIVSWSSCNASFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIHPERWEFANDEFVKDQKHLLKNIHRRKPIHSHSHPPGSIVDPERAAFEEEIEKLSREKTSLESNIQNFRQHQSTAKLQLEDFLQRLDGTEKRQKQLLNFFEKALQNPSFVEHLSRKIESMDLAAYNKKRRLPQVDHVQPVAESSFGDSHSNFRMEFGNVFHQDFSNKLRLELSPAVSDMNLVSRSTQSSNEDGESPQKKLSEVEPKGLQTRTTLTFAPETLELADTGASFTFKMDSCLSRKATTAENSKLISLEPSSEEGDSHISCQLNLTLASHPLQVNRNSYSARSPQIDCQEIGKLAESRFFASGKESDSGVSSNQNVAVEATNLASPKEAPSNNPINPAPPDRVNDVFWEQFLTERPGCSDNEEAISNYRANPYDEQDDGRSVHGISRNIKNMDQLTL*	480

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu6g02677	479	Pfam	HSF-type DNA-binding	14	103	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lapu6g02677	479	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	8	268	IPR027725	-
	Lapu6g02677	479	PRINTS	Heat shock factor (HSF) domain signature	14	37	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lapu6g02677	479	PRINTS	Heat shock factor (HSF) domain signature	65	77	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lapu6g02677	479	PRINTS	Heat shock factor (HSF) domain signature	52	64	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lapu6g02677	479	ProSitePatterns	HSF-type DNA-binding domain signature.	53	77	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lapu6g02677	479	MobiDBLite	consensus disorder prediction	452	479	-	-
	Lapu6g02677	479	MobiDBLite	consensus disorder prediction	259	284	-	-
	Lapu6g02677	479	SUPERFAMILY	"Winged helix" DNA-binding domain	10	103	IPR036390	-
	Lapu6g02677	479	FunFam	Heat shock transcription factor 1	7	104	-	-
	Lapu6g02677	479	Coils	Coil	121	148	-	-
	Lapu6g02677	479	Gene3D	-	8	104	IPR036388	-
	Lapu6g02677	479	SMART	hsfneu3	10	103	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu6g02677	Lapu-Chr6	27307036	27312061	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu6g02677	14	479	HSF	AT4G13980	55.414	5.90e-168	480

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Lapu6g02677		HSF_DNA-bind	1.1e-30	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu6g02677	K09419		-	gmx:100786408	865.914