Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02670 ATGGAAACTGAAAAGTCTAACATTTCAAAAGCTGAAGAACTTAAAATCCTTGCCAATGAAGCTTTCAATGCTCGAAAATACTCCCAAGCCATTGATCTATATACTCAAGCAATCGAACTAAACAGTGGAAATGCAGTTTACTATTCTAATCGTGCCTTTGCCCATCTTCGGCTTGAGGAATATGGTAGTGCAATCCAAGATGCCACAAAGGCTATTGAAGTTGATCCTAAATATTCAAAGGGTTATTACAGGCGAGGTGCTGCTCATATTGGGCTGGGAAAATTCAAGGAAGCACTGAAAGATTTTCAGCAGGTCAAGAAAATGTGTCCAAATGATCCTGATGCAACAAAGAAATTGAAGGAATGTGAAAAGGCAGTTATGAAGCTTAAATTTGAAGAAGCAATTGCTGCACCTGAGTCTGAAAGGCGTTCAATAGCTGAATCCATAGATTTCCGCACAATAGGAAAGGGCCGCAATTCTTCGGTGCCAACCGAAGTGGCCATAGCAGCAGTGGCAGTAGCAGTTATGGCAGCAGCGGTGATGTTGTTCAGGACATCAAAGACCACCATAGTAATTGCAATTGTGGTTGGTTTGCTGTTGCTCCTCGGGGCTTATTGGTGGAGTGGCCACACTACTGATGTTGAGCCACAATATGTTGGAGCAAGAATAGAGGGGGATGTTGTTACTTTGGATTTTGTGAAAAAAATGATGGAAGATTTCAAGAATCAGAAGTTCTTGCATAAACGGTATGCATTCCAGATTGTATTGCAAACAAGAGAAATTTTGCAATCTTTGCCTTCTCTTGTTGACATAGATGTTCCTTATGGCAAACGTTTTACTGTTTGTGGTGATGTGCATGGGCAGTTCTATGATCTTTTGAATATTTTTGAGCTTAATGGGCTTCCTTCAGAAGAGAATCCGTATCTATTTAATGGTGACTTTGTGGATAGGGGATCTTTTTCATTGGAAGTTATCCTAACCTTGTTTGCATTTAAGTGCATGTCTCCATCAGCCATATATTTAGCCAGAGGAAATCACGAGAGCAAGAGCATGAACAAGATATATGGTTTTGAGGGTGAGGTGCGCTCCAAGTTGAATGATACATTTGTTGAACTATTTGCGGAAGTATTCTGCTGTTTACCTTTGGCCCATGTCATAAATGAGAAAGTTTTCGTAGTTCATGGAGGTCTTTTCAGTGTTGACGGGGTCAAACTCTCTGACATCCGATCAATTAATCGATTTTGTGAACCTCCTGAAGAAGGGTTGATGTGTGAATTGCTTTGGAGTGATCCACAACCTCTCCCCGGAAGGGGCCCAAGCAAGCGTGGTGTGGGCCTTTCTTTTGGTGTAGATATTACAAAAATGTTTTTGCAGGAAAATAATTTAGACTTAGTTGTGAGATCTCATGAAGTAAAGGATGAGGGTTACGAGATTGAACATGATGGTAAACTCATAACTGTGTTTTCTGCTCCAAATTACTGTGACCAGATGGGTAACAAAGGTGCATTTATCCGATTTGAAGCACCAGATTTGAAACCTAACATTGTCACATTCTCAGCTGTGCCACACCCTGATGTCAAACCAATGGCTTATGCAAACAACTTCTTCAGGATGTTCTCATAA 1623 0.4079 METEKSNISKAEELKILANEAFNARKYSQAIDLYTQAIELNSGNAVYYSNRAFAHLRLEEYGSAIQDATKAIEVDPKYSKGYYRRGAAHIGLGKFKEALKDFQQVKKMCPNDPDATKKLKECEKAVMKLKFEEAIAAPESERRSIAESIDFRTIGKGRNSSVPTEVAIAAVAVAVMAAAVMLFRTSKTTIVIAIVVGLLLLLGAYWWSGHTTDVEPQYVGARIEGDVVTLDFVKKMMEDFKNQKFLHKRYAFQIVLQTREILQSLPSLVDIDVPYGKRFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSLEVILTLFAFKCMSPSAIYLARGNHESKSMNKIYGFEGEVRSKLNDTFVELFAEVFCCLPLAHVINEKVFVVHGGLFSVDGVKLSDIRSINRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGVDITKMFLQENNLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDLKPNIVTFSAVPHPDVKPMAYANNFFRMFS* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02670 540 FunFam Serine/threonine-protein phosphatase 5 1 138 - -
Lapu6g02670 540 PIRSF PPPtase_5 1 540 - -
Lapu6g02670 540 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515
Lapu6g02670 540 SMART pp2a_7 246 522 IPR006186 GO:0016787
Lapu6g02670 540 Pfam Calcineurin-like phosphoesterase 278 472 IPR004843 GO:0016787
Lapu6g02670 540 Pfam Tetratricopeptide repeat 17 78 - -
Lapu6g02670 540 Gene3D - 206 539 IPR029052 -
Lapu6g02670 540 ProSiteProfiles TPR repeat profile. 79 112 IPR019734 GO:0005515
Lapu6g02670 540 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Lapu6g02670 540 SUPERFAMILY Metallo-dependent phosphatases 227 535 IPR029052 -
Lapu6g02670 540 PRINTS Serine/threonine phosphatase family signature 308 335 IPR006186 GO:0016787
Lapu6g02670 540 PRINTS Serine/threonine phosphatase family signature 375 401 IPR006186 GO:0016787
Lapu6g02670 540 PRINTS Serine/threonine phosphatase family signature 405 432 IPR006186 GO:0016787
Lapu6g02670 540 PRINTS Serine/threonine phosphatase family signature 278 305 IPR006186 GO:0016787
Lapu6g02670 540 PRINTS Serine/threonine phosphatase family signature 461 481 IPR006186 GO:0016787
Lapu6g02670 540 PRINTS Serine/threonine phosphatase family signature 341 365 IPR006186 GO:0016787
Lapu6g02670 540 PRINTS Serine/threonine phosphatase family signature 483 499 IPR006186 GO:0016787
Lapu6g02670 540 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 44 533 - -
Lapu6g02670 540 SMART tpr_5 79 112 IPR019734 GO:0005515
Lapu6g02670 540 SMART tpr_5 45 78 IPR019734 GO:0005515
Lapu6g02670 540 SMART tpr_5 11 44 IPR019734 GO:0005515
Lapu6g02670 540 CDD MPP_PP5_C 218 533 IPR041753 -
Lapu6g02670 540 FunFam Serine/threonine-protein phosphatase 5 203 539 - -
Lapu6g02670 540 SUPERFAMILY TPR-like 7 137 IPR011990 GO:0005515
Lapu6g02670 540 Pfam Tetratricopeptide repeat 80 112 IPR001440 GO:0005515
Lapu6g02670 540 Gene3D Tetratricopeptide repeat domain 2 157 IPR011990 GO:0005515
Lapu6g02670 540 Pfam PPP5 TPR repeat region 211 270 IPR013235 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02670 Lapu-Chr6 27144641 27157576 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02670 224 462 Calmodulin-binding Proteins AT5G63870 33.451 5.02e-39 142