Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02638 ATGTCGCCCAGCTTCGTCTTCGACCCTCCCAGTGACGAAGAAATCGAACATTCCGAACGAGAAGAGGAGGAAGAAGACGAGGAAGAAGCTGAATCAGGATCAGATCCTGACTCAGAAGAAGAAGAAGAAGAAAAAGAAGGGCGGCACAAAGAAGCGCGAGTTTCGAAGAAGAAAACGCAGTCCCCATGGGACTTCGCTAAATACACGGAATCAGTGGCTGAGGAACACGCTCGAAGGAGCACAACCTCGGTGGACGAGAAAATCTCCAAAGCACTTAGACAACGTTCCGCGCCGCTAGTTGCTGAGCTTGACCACAGCTCTGAGTCTGAGCTCGATGAACAAGAAGATTATAGACCAGATGAAGAAGATGAAGAAGAGGGTTATGGTGGTGATAGCAAGTCATTTTTTGCTCCTTCTGATGGAACCTCTTTCCACGCAGATTCCTTCTTGCAGCTTAATTTGTCTCGTCCTTTGCTCAGGGCTTGTGAGGCTCTGGGGTATGCTAAACCAACTCCAATTCAGGCAGCATGTATTCCATTGGCGTTGTCTGGTCGTGATATATGTGGTAGTGCCATTACTGGGTCAGGGAAGACAGCTGCATTTGCACTACCTACATTAGAGAGGTTGTTGTTCCGTCCAAAACGCATGCGTGCAATAAGGGTCCTCATTCTTACTCCAACCAGAGAGTTGGCAGTCCAAGTTCACAGCATGATAGAGAAACTTGCTCAGTTTACTGATATAAGGTGTTGCCTAGTTGTTGGAGGTCTGTCAACAAAGGTGCAAGAGGTTGCTTTGAGATCAATGCCAGACATTGTTGTGGCTACTCCAGGACGCATGATTGATCATTTACGCAATGCTATGTCTGTTGATTTGGATGATCTTGCTGTTCTAATCCTTGATGAGGCAGATCGTCTTTTGGAGCTTGGATTTAGTGCTGAAATTCAAGAACTTGTTCGCTTGTGTCCCAAAAAAAGGCAGACTATGCTGTTTTCAGCAACAATGACTGAGGAGGTTGATGAACTTATTAAACTTTCCCTGTCAAAGCCCTTGCGTCTCTCTGCTGACCCGTCTACAAAACGACCAGCAACCTTGACTGAGGAAGTTGTTAGGATACGAAGAATGCGTGAAGTAAACCAGGAAGCTGTTCTTCTTGCAATGTGCTCAAAAACTTTTACTTCCAAAGTCATCATCTTCAGTGGAACAAAGCAAGCTGCACATAGATTAAAGATTATATTTGGATTAGCTGGCCTAAAAGCTGCTGAGCTTCATGGAAATCTTACTCAAGCCCAGCGTCTGGAAGCTTTGGAACAGTTTAGGAAACAGCAAGTGGAATTTTTGGTTGCAACAGATGTGGCTGCCCGTGGACTTGACATTATTGGTGTTCAAACAGTTATCAACTTTGCATGTCCACGTGATCTTACTAGCTATGTTCATCGAGTGGGGCGTACTGCAAGAGCCGGAAGAGAAGGATATGCTGTCACTTTTGTGACTGACAATGACCGATCACTTTTAAAAGCCATTGCCAAGAGGGCTGGTTCAAAGTTGAAAAGCCGCATTGTTGCCGAGCAATCTATACTTAAGTGGTCTCATATTATTGAGCAAATGGAGGATCAAATTAATGAAGTACTTCATGAAGAGAGTGAAGAAAGAGCCCTAAGGAAAGCTGAAATGGAGGCTACAAAGGCCGAAAACATGATTGCACATAAGGACGAGATCTTTTCCCGTCCAAAAAGAACATGGTTTGTCACAGAGAAGGAGAAAAAGCTTGCTGCAAAAGCAGCAAAGGCATCCTCCGTAGAAAAGAACAAGAGTTCTGGGAAAGAGGTAATTAGTGCCGAACAAGCTGAAGACCTCAGAATGAAGGAAAAAAGGAAGCGAGAACGAGAGAAACATTTACCTAGAAAGAAGCGCAGAAAGCTGGAAGCAGCTAGAGAGATGTTGGAGGATGAGGAGCAGGATGGTAACCAAGTAGAGGCCAAGGGGACAAATAAAAAAGAAAAAGGTGGAATGTCACTTGTTGATCTTGCTTACCGACGGGCAAAAGCAGTGAAGGCTGTCAAGAAGGCAGTAGATTCTGGCAAGGTTGTGAAGAAGAGTCAAAAGAAATCTAGTAATGTTGCGAGAAAAACTCCTTCAAGGACAGAAGAGATGAGGGATCTATTCCAGACTGACATGAAGGATAAAAAGCCAAAGAGAAGAGGTGTTGGAGGAGGAAAGAAGTCTAAGAGTTCATTCAAAAGCAAGTCAAGGTACAAACGCAAGTAG 2265 0.4455 MSPSFVFDPPSDEEIEHSEREEEEEDEEEAESGSDPDSEEEEEEKEGRHKEARVSKKKTQSPWDFAKYTESVAEEHARRSTTSVDEKISKALRQRSAPLVAELDHSSESELDEQEDYRPDEEDEEEGYGGDSKSFFAPSDGTSFHADSFLQLNLSRPLLRACEALGYAKPTPIQAACIPLALSGRDICGSAITGSGKTAAFALPTLERLLFRPKRMRAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKVQEVALRSMPDIVVATPGRMIDHLRNAMSVDLDDLAVLILDEADRLLELGFSAEIQELVRLCPKKRQTMLFSATMTEEVDELIKLSLSKPLRLSADPSTKRPATLTEEVVRIRRMREVNQEAVLLAMCSKTFTSKVIIFSGTKQAAHRLKIIFGLAGLKAAELHGNLTQAQRLEALEQFRKQQVEFLVATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSILKWSHIIEQMEDQINEVLHEESEERALRKAEMEATKAENMIAHKDEIFSRPKRTWFVTEKEKKLAAKAAKASSVEKNKSSGKEVISAEQAEDLRMKEKRKREREKHLPRKKRRKLEAAREMLEDEEQDGNQVEAKGTNKKEKGGMSLVDLAYRRAKAVKAVKKAVDSGKVVKKSQKKSSNVARKTPSRTEEMRDLFQTDMKDKKPKRRGVGGGKKSKSSFKSKSRYKRK* 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02638 754 MobiDBLite consensus disorder prediction 1 133 - -
Lapu6g02638 754 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 32 705 - -
Lapu6g02638 754 Pfam DEAD/DEAH box helicase 171 341 IPR011545 GO:0003676|GO:0005524
Lapu6g02638 754 CDD SF2_C_DEAD 364 496 - -
Lapu6g02638 754 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 147 175 IPR014014 GO:0003724
Lapu6g02638 754 MobiDBLite consensus disorder prediction 606 624 - -
Lapu6g02638 754 MobiDBLite consensus disorder prediction 15 42 - -
Lapu6g02638 754 MobiDBLite consensus disorder prediction 593 670 - -
Lapu6g02638 754 Gene3D - 354 523 IPR027417 -
Lapu6g02638 754 Gene3D - 112 353 IPR027417 -
Lapu6g02638 754 MobiDBLite consensus disorder prediction 688 754 - -
Lapu6g02638 754 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 219 507 IPR027417 -
Lapu6g02638 754 Coils Coil 532 565 - -
Lapu6g02638 754 Coils Coil 640 660 - -
Lapu6g02638 754 MobiDBLite consensus disorder prediction 639 667 - -
Lapu6g02638 754 MobiDBLite consensus disorder prediction 708 731 - -
Lapu6g02638 754 MobiDBLite consensus disorder prediction 69 92 - -
Lapu6g02638 754 MobiDBLite consensus disorder prediction 108 128 - -
Lapu6g02638 754 MobiDBLite consensus disorder prediction 43 60 - -
Lapu6g02638 754 MobiDBLite consensus disorder prediction 732 754 - -
Lapu6g02638 754 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 178 352 IPR014001 -
Lapu6g02638 754 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 363 526 IPR001650 -
Lapu6g02638 754 SMART helicmild6 402 487 IPR001650 -
Lapu6g02638 754 SMART ultradead3 166 367 IPR014001 -
Lapu6g02638 754 Pfam Helicase conserved C-terminal domain 384 487 IPR001650 -
Lapu6g02638 754 CDD DEADc_DDX27 158 353 - -
Lapu6g02638 754 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 298 306 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02638 Lapu-Chr6 26624601 26632929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02638 135 504 Eukaryotic Initiation Factors Gene Family AT3G13920 33.512 3.38e-51 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02638 K13181 - gmx:100776684 1091.26