Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02602 ATGGGGTTAATTGCAGGAGCCATCAGTGGCCAGACCACAGAAGCTGGTTTTCTTGATGGTGCTTGCAAAGGAGCTGTGACAGGGGCAATTGCTGCACTAGAATTGTTAAATAATGCTGCAGCTTCTGAGCCTCTATCTAAGGTTGCCCTACTGAGGTGTTTATTAAATGGAAAGCTATTTGTGGAATGGATTTGCCCAGTTGTTGCACAAGCCTATCAATGTCATATCAATGCACATGGAACAACTTACAGAGAAGAATCAGATATTTATAATGGCATTGTCAGGGAAATCACAGTTAAAGGGATGGCTTGGAATATCATCCAAGAGCTTCCAGTTCAACAATTCAATTCCAGTCAAATGTTGAAACTTTACAATGAATCATGCTGCTCAATTTGCTTCCAGGATTTTGAGGATGAAGAATTTGTGAGGACACTTCCAAACTGTGGTCATTGTTTTCACTTGGTGTGCATAGACAAATGGCTAGTCCAACAAGGATCTTGCCCCATGTGTAGAATTTATGTTTCACATTTA 531 0.4068 MGLIAGAISGQTTEAGFLDGACKGAVTGAIAALELLNNAAASEPLSKVALLRCLLNGKLFVEWICPVVAQAYQCHINAHGTTYREESDIYNGIVREITVKGMAWNIIQELPVQQFNSSQMLKLYNESCCSICFQDFEDEEFVRTLPNCGHCFHLVCIDKWLVQQGSCPMCRIYVSHL 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02602 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 175 IPR013083 -
Lapu6g02602 177 SMART ring_2 129 170 IPR001841 -
Lapu6g02602 177 Pfam Ring finger domain 129 171 IPR001841 -
Lapu6g02602 177 SUPERFAMILY RING/U-box 121 175 - -
Lapu6g02602 177 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Lapu6g02602 177 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 1 171 IPR044523 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02602 Lapu-Chr6 26142311 26143641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02602 1 174 C3H Transcription Factor Family AT5G66070 32.787 2.94e-32 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02602 - K19041 gmx:100799697 298.516