Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02595 ATGTTGTCCCTCTCAAAACCCCACTTCTCTCCGGTTCGCCCCACCCTCCCTCTGGTTCGCTGCGGCATCCGCGAGCTCCGCCAACGAATCCACACCGTTCAAACCACGCAAAAGATTACCGAAGCCATGAAACTCGTTGCCGCCGCTAGGGTCCGCCGCGCTCAGGAGGCCGTCGTCAACGGCCGCCCCTTCTCCTCAAACCTCGCAGCAATGCTGAACGACATCACCCAGCGCCTCCATTACGACGACATTTCCACCCCTCTCACCGATACCAGACCCGTCAAGACCGTTGCCCTCGTCGTCTTCACAGGCGATCGCGGCCTCTGCGGCGGTTTCAACAAATGGGTAATAAAGAAAGCCGTCTCCCGAATCGAGGAGCTGAAGAAACTCAATCTGGGGTGCGTTGTTATAAGCGTTGGCAAAAAGGGTAACTCGTTTTTCACTCACTGCAGCGAAAAGGAACCCCCTTTTGTTAAAGTCGACAGCTTTGTCGAAATAGGTGGTTTTCCCACCGCGAAGGAGGCTCAAATAATTGCTGATGATGTTTTCTCATTGTTTGTTAGTGAGGAGGTCGATAAAGTTGAGCTTGTGTACACTAAATTTGTTTCATTGGTTAGGTTTGAGCCTGTGGTTCAGACTTTGCTACCTTTGGGGGAGGTTTATGATGTGAAAGATGATGTTTTTAGGTTGAGTTCTAAGGAGGGGAAATTGGCTGTGGAGAGGGATGTTGTGAGGTTAAGGAAAGAGAGTGAGGTGTTTTCCCCTCTTATGGAGTTTGAGCAGGACCCTGTTTTGATTCTTGATGCCATGTTGCCTCTTTATTTGAATAGTCAGATTTTGAGGGGGTTGCAGGAGTCTGTGGCTAGTGAGCTTGCTGCTAGGATGGGGGCCATGGCTGCTGCCACCGATAATGCGGTTGAATTGAGGAAGAGACTTTCCGTTGAATACAACCGGGAGCGGCAAGCTAAGATCACTGGGGAGTTGCTGGAGATTGTGGCTGGAGCTGAGGCACTAAAACCAATTGACTGA 1029 0.5083 MLSLSKPHFSPVRPTLPLVRCGIRELRQRIHTVQTTQKITEAMKLVAAARVRRAQEAVVNGRPFSSNLAAMLNDITQRLHYDDISTPLTDTRPVKTVALVVFTGDRGLCGGFNKWVIKKAVSRIEELKKLNLGCVVISVGKKGNSFFTHCSEKEPPFVKVDSFVEIGGFPTAKEAQIIADDVFSLFVSEEVDKVELVYTKFVSLVRFEPVVQTLLPLGEVYDVKDDVFRLSSKEGKLAVERDVVRLRKESEVFSPLMEFEQDPVLILDAMLPLYLNSQILRGLQESVASELAARMGAMAAATDNAVELRKRLSVEYNRERQAKITGELLEIVAGAEALKPID* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02595 342 FunFam ATP synthase gamma chain, chloroplastic 233 338 - -
Lapu6g02595 342 Pfam ATP synthase 23 338 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lapu6g02595 342 ProSitePatterns ATP synthase gamma subunit signature. 324 337 IPR023632 -
Lapu6g02595 342 Gene3D ATP synthase, gamma subunit, helix hairpin domain 234 338 - -
Lapu6g02595 342 Gene3D ATP synthase, gamma subunit, helix hairpin domain 22 87 - -
Lapu6g02595 342 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 24 338 IPR035968 GO:0015986|GO:0045261|GO:0046933
Lapu6g02595 342 CDD F1-ATPase_gamma 23 335 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lapu6g02595 342 FunFam ATP synthase gamma chain, chloroplastic 21 88 - -
Lapu6g02595 342 PRINTS ATP synthase gamma subunit signature 316 337 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lapu6g02595 342 PRINTS ATP synthase gamma subunit signature 285 304 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lapu6g02595 342 PRINTS ATP synthase gamma subunit signature 192 209 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lapu6g02595 342 PRINTS ATP synthase gamma subunit signature 94 113 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lapu6g02595 342 Hamap ATP synthase gamma chain [atpG]. 20 338 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lapu6g02595 342 NCBIfam ATP synthase F1 subunit gamma 23 338 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lapu6g02595 342 Gene3D - 88 218 - -
Lapu6g02595 342 PANTHER ATP SYNTHASE GAMMA CHAIN 20 338 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lapu6g02595 342 FunFam ATP synthase gamma chain 87 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02595 Lapu-Chr6 26042269 26044419 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02595 7 339 Primary Pumps ATPases AT1G15700 64.553 3.16e-146 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02595 K02115 - gmx:100797879 541.191