Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02593 ATGGAGGGTATGGTAAGCAGCAATGACGTTGCCAATGGTGAAAACGGATTGCTGGCAATGTTTGGTGACAATGAATTTGGTGGCGGTGAGGGTGCAGGTGGTGAGGGTGGTGGCAATGTGGAGGAGGTGACTCTGAAGAAGGGTCCTTGGACAACTGCAGAAGATGCTGTTCTTATAGATTATGTGACAAAACACGGCGAAGGGAATTGGAATGCAGTGCAGAGGAACACAGGGTTGAATAGGTGTGGGAAGAGTTGTAGGCTTAGGTGGGCTAACCATTTGAGACCCAATTTGAAGAAGGGTGCATTCTCTCCTGAGGAAGAAAAGCTCATCGTTGACCTTCATTCACAATTTGGCAACAAATGGGCCAGAATGGCTGCTCTGTTGCCTGGGAGAACAGACAATGAGATCAAGAACTATTGGAACACAAGGATCAAACGTCGCCAAAGGCAAGGTCTTCCTCTCTATTCAGATGAGCATGATCACCATTGTTCCACAACAACAACAACATCCCCTTCCCCATGCCTCACACAAACAGGATCAAACCCTAATAACACTCTCACAAACTTTGAGTTCTTCAGTCAAAACCACCACCAACACTACCAACAACAACAGCAACAACAACAACTCCAACCTCTATCTCCAACTGCACCTCATCAATCCCCTCTCAGTTCCCCTCTCCAACACAGACAACCCTTCACTTCTTCTTCACCTCTCACTTTCTTAGACCATTCATCTCTTCCACTCTCCTCCTCTTCGCCCTCCTCTCTCTCCTTCACCTTCCAAAGACCTGCACCAATGCTATGCACCCCTCTTCGCTTCAAACGCTACCGTGCCTCTCCAAGCTACAACCCCCTCCCTGACCTTCCTCTCACCACCCAATTCCCTCATCTTGATGGATTCAGGTTCCCAGTTTCTTCAGGTTTCTCTCCGTTTTTTCAACCCTCTTTGTTAGAATCAGACCGAGGGATTTCTTCTTCTTCCCCCTCACCTTTCCAACCCAAGTTGGAGCTCCCTTCAAACCAGTTCTATAAACCACACCAAGAGCAAGACATTGATTTCAATGATCCTTCTTTTCAAACTAGTAGTGGCTTGCTCGGGGATCTTATCTTGGAGGCTCAGGCTTTAGCTTCGGGCCAGAACTCAAAGAAACGAGGTTACTTGAGTTTAAATGAGGGAAATGACATGTTTGATGCATTCCAAAGCTTTGAGGACTTTCCATCTAGCTCTCTTTACTGGCCTTCTTCTGCTTCAGCACCAAAAGCAAAGGAAGAGGCACCTGACTTCAGCAAATTCATGAATGAGGACTTGTCATCATTGCTTACAGTGATTCCATCTTCCAATATACAGGGTCATGAGTGGCTGAATAATGGTGTCCCAGAAGGGTCCAATGTCCAACCCTCTGGTAGTGGCATGACAGATGACAATTTTGGACTTGATATGAAGCCCATAGCTTCATTGTTTCCTCTCACCAATACCACAAACCATAATGAAAACCAAGACTGCTACCCTTGGGACAATTTGCCTGGTCTCTGCTAA 1539 0.4652 MEGMVSSNDVANGENGLLAMFGDNEFGGGEGAGGEGGGNVEEVTLKKGPWTTAEDAVLIDYVTKHGEGNWNAVQRNTGLNRCGKSCRLRWANHLRPNLKKGAFSPEEEKLIVDLHSQFGNKWARMAALLPGRTDNEIKNYWNTRIKRRQRQGLPLYSDEHDHHCSTTTTTSPSPCLTQTGSNPNNTLTNFEFFSQNHHQHYQQQQQQQQLQPLSPTAPHQSPLSSPLQHRQPFTSSSPLTFLDHSSLPLSSSSPSSLSFTFQRPAPMLCTPLRFKRYRASPSYNPLPDLPLTTQFPHLDGFRFPVSSGFSPFFQPSLLESDRGISSSSPSPFQPKLELPSNQFYKPHQEQDIDFNDPSFQTSSGLLGDLILEAQALASGQNSKKRGYLSLNEGNDMFDAFQSFEDFPSSSLYWPSSASAPKAKEEAPDFSKFMNEDLSSLLTVIPSSNIQGHEWLNNGVPEGSNVQPSGSGMTDDNFGLDMKPIASLFPLTNTTNHNENQDCYPWDNLPGLC* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02593 512 FunFam Transcription factor GAMYB 102 148 - -
Lapu6g02593 512 SMART sant 99 147 IPR001005 -
Lapu6g02593 512 SMART sant 46 96 IPR001005 -
Lapu6g02593 512 Gene3D - 46 99 - -
Lapu6g02593 512 ProSiteProfiles Myb-like domain profile. 42 94 IPR001005 -
Lapu6g02593 512 ProSiteProfiles Myb-like domain profile. 95 145 IPR001005 -
Lapu6g02593 512 MobiDBLite consensus disorder prediction 156 181 - -
Lapu6g02593 512 MobiDBLite consensus disorder prediction 196 238 - -
Lapu6g02593 512 FunFam MYB-related transcription factor 46 99 - -
Lapu6g02593 512 Pfam Myb-like DNA-binding domain 47 94 IPR001005 -
Lapu6g02593 512 Pfam Myb-like DNA-binding domain 100 143 IPR001005 -
Lapu6g02593 512 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 149 IPR017930 -
Lapu6g02593 512 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 94 IPR017930 -
Lapu6g02593 512 SUPERFAMILY Homeodomain-like 45 141 IPR009057 -
Lapu6g02593 512 MobiDBLite consensus disorder prediction 166 181 - -
Lapu6g02593 512 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 33 462 - -
Lapu6g02593 512 Gene3D - 102 165 - -
Lapu6g02593 512 CDD SANT 49 94 IPR001005 -
Lapu6g02593 512 CDD SANT 102 143 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02593 Lapu-Chr6 26024656 26027211 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02593 26 512 MYB Transcription Factor Family AT4G26930 36.308 3.67e-69 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu6g02593 Myb_DNA-binding 2.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02593 - - vun:114188481 768.844