Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02580 ATGTCGAATTTGCCCCAATCGCTGTCGATGGGCGCGGCCTTCGGCGGCGGCGGTCCGCCGCCGTCGTCGAGTGGGGCCGGGGCACAGGGCTCCGGCGCCGGTAAGGATCGGAAGATGGCATCGGCGGAGCAACTCGTACTGGAACTCAGCAACCCTGAACTCCGAGAAAACGCGCTTCTGGAACTCTCCAAGAAGAGGGAGCTATTTCAAGATCTGGCTCCTTTGTTGTGGAATTCTTTTGGTACTATTGCTGCACTTTTGCAGGAAATAGTTTCAATATACCCTGTTCTTTCGCCACCAAATCTTACTCCTGCACAATCAAATCGAGTGTGTAACGCTCTTGCTCTTCTCCAGTGTGTAGCATCTCACCCTGATACAAGGATGTTATTCCTCAATGCTCATATACCTTTATATCTGTACCCGTTCCTTAATACAACAAGCAAGTCAAGACCATTTGAGTACTTGAGGCTTACCAGTCTTGGTGTCATTGGTGCATTGGTGAAGGTTGATGATACAGAAGTTATAAGTTTCCTTCTTTCAACGGAAATAATTCCTCTGTGCTTGCGCACCATGGAAATGGGTAGTGAGCTATCCAAAACAGTTGCAACATTTATTGTTCAAAAAATTCTGTTGGATGATGTGGGCTTGGATTATATTTGTACTACAGCCGAGCGCTTTTTTGCGGTAGGTAGAGTTTTGGGGAATATGGTGGCCGCTCTTGCTGAGCAACCCTCCTCTCGTCTACTGAAGCATATCATTCGATGCTATCTTCGCCTGTCAGATAATCCAAGGGCTTGTGATGCATTAAGAAGCTGTCTGCCAGACATGTTAAGAGATGCTACTTTCAGCAGTTGCCTTCGTGAAGACCCCACAACTAGGAGGTGGCTACAACAATTGCTTCATAATGTTGGAGTGAATCGAGTTCCTGCACTACAAGCTGGAGGAGGTTTCGATCATATGATTGTGACCTGA 972 0.4733 MSNLPQSLSMGAAFGGGGPPPSSSGAGAQGSGAGKDRKMASAEQLVLELSNPELRENALLELSKKRELFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLREDPTTRRWLQQLLHNVGVNRVPALQAGGGFDHMIVT* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02580 323 Gene3D - 34 304 IPR011989 -
Lapu6g02580 323 Pfam Cell differentiation family, Rcd1-like 45 303 - -
Lapu6g02580 323 SUPERFAMILY ARM repeat 47 278 IPR016024 -
Lapu6g02580 323 FunFam Cell differentiation protein RCD1 35 306 - -
Lapu6g02580 323 MobiDBLite consensus disorder prediction 1 38 - -
Lapu6g02580 323 PANTHER UNCHARACTERIZED 38 306 IPR007216 GO:0006402|GO:0030014
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02580 Lapu-Chr6 25880382 25890702 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Lapu6g02580 Rcd1 3.6e-130 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02580 K12606 - gmx:100784529 605.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02580 6 25880382 25890702 Lapu6g02580 6 25880382 25890702 PCT