Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02576 ATGGAAGAAGCTACCTGCAATGATGACTCTAATATTGCAGCAACTAGTTTAGATCTCCTTACAAAGAGTTCCCCTACCAATAGATCAACTGCGGGAGAAGGATCATCAGAAGCAAGGGGTAATAAAAGAGATGATAAGTTTGCAGCTATGTTATCTGAATTGCACCACATGAATGAGGAAAATCAACGTTTGAGAGAGCTGGTTGATCTGGTGAACAATAAGTACCATGCTCTACAGAATCAACTTATGAAACAGATGGAAAAACAACGTAAGAATGAGGGTAAGAAAGCTGATATGATTCCAAGGCCTTTCTTGGATATTGGAGGTGCTATGGAGGAAGAGAGTTCGCAGCAATATTCCAAGGGAAAATTGCGAGAAAGCAAAAACATGATTGACTTGATTGAGATCAGCAAGAGACAGAAGATTTGCAGTAATAGAGAAGTTACTGAGTTGGAGGCATCTGACAAAGCTATTCCAAGGTGGCTCTCAAACGAAGTCACAAGATTGAGTTCTTTGAAGGATGTTGATGAAGCATCAGAAACCATGTCAATGATAAAGAAAGCTCGTGTATCAGTTCGAGCAAGATCTGTTTCTTCCATGATTTCTGATGGATGTCAATGGAGAAAGTATGGGCAGAAGATGGCAAAAGGGAATCCATGTCCAAGAGCTTATTATCGTTGTTCAATGGGAACTGGTTGTCCAGTTCGAAAGCAAGTGCAAAGGAGTGCAGAAGATCAGAGTGTGTTGGTCACAACATATGAAGGGCAGCATAATCATGTACTCCCTCCCACTGCCAAAGCAATTGCATCCACCACATCTGCAGCTGCATCAATGCTTCTTTCAGGATCAATGCCAAGTTCAGATGGCCTTCCACACCCAAACATACTAGAAAGTGCAACACTTCCATTTTCACATAACTTAGCAACCCTCTCAGCTTCAGCTCCATTTCCAACTATCACTTTGGATCTCACTCAAACTGCCACCAATACTTCCTCACAACAGTTACCACAGGATTACCAACTTAGCCTCCTTTCCCCACTTTTGGCACCAAACATTTTTTGCCAAAGTAAGCTTTCTAGCTTACATGGCTCTCAGGGAACAGAAACTGCTTCATTTGCTGACACGATAAATGCAGCAACAGCTGCTATCACTACAAACCCCAAATTCAGTGCAGCTCTTACGGCTGCCATAACATCTATTATTGGAAGTTCACATCCAGTGGAGACTCAGCAGTGCAATAACAAATAA 1248 0.4199 MEEATCNDDSNIAATSLDLLTKSSPTNRSTAGEGSSEARGNKRDDKFAAMLSELHHMNEENQRLRELVDLVNNKYHALQNQLMKQMEKQRKNEGKKADMIPRPFLDIGGAMEEESSQQYSKGKLRESKNMIDLIEISKRQKICSNREVTELEASDKAIPRWLSNEVTRLSSLKDVDEASETMSMIKKARVSVRARSVSSMISDGCQWRKYGQKMAKGNPCPRAYYRCSMGTGCPVRKQVQRSAEDQSVLVTTYEGQHNHVLPPTAKAIASTTSAAASMLLSGSMPSSDGLPHPNILESATLPFSHNLATLSASAPFPTITLDLTQTATNTSSQQLPQDYQLSLLSPLLAPNIFCQSKLSSLHGSQGTETASFADTINAATAAITTNPKFSAALTAAITSIIGSSHPVETQQCNNK* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02576 415 ProSiteProfiles WRKY domain profile. 196 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu6g02576 415 MobiDBLite consensus disorder prediction 8 36 - -
Lapu6g02576 415 SMART WRKY_cls 201 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu6g02576 415 Coils Coil 54 88 - -
Lapu6g02576 415 MobiDBLite consensus disorder prediction 1 43 - -
Lapu6g02576 415 Pfam WRKY DNA -binding domain 203 259 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu6g02576 415 Gene3D WRKY domain 186 263 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu6g02576 415 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 36 412 IPR044810 GO:0003700
Lapu6g02576 415 SUPERFAMILY WRKY DNA-binding domain 198 262 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu6g02576 415 FunFam probable WRKY transcription factor 31 186 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02576 Lapu-Chr6 25820889 25824163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02576 48 401 WRKY Transcription Factor Family AT4G04450 43.544 3.88e-88 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lapu6g02576 WRKY 3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02576 - - pvu:PHAVU_006G047300g 572.007