Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02573 ATGGGTGCCGGCGACGCCGTGGAATCCGGTTCAAGGCCGGCTTTTTTCAAAGAACAGAAATACCGCGGCGTCCGGAAGAGACCGTGGGGCCGGTTCGCCGCCGAAATCAGAGACCCTTTGAAGAAAGCAAGGGTTTGGCTCGGAACCTTCGACTCCGCCGAGGATGCGGCGCGTGCGTACGACGCGGCGGCGAGAACCCTCCGGGGACCCAAGGCAAAAACCAACTTCCCCCTCCCTCCGCCGTTCTACCACCCCGATCCGTTCACCGACCACCGGTATTTCGCGGGCTCCGGCGAGCCCTTTCATGATCACCGCCAACCCACCTCCAGTGGCATGAGCAGTACCGTTGAGTCTTTCAGCGGTCCACGCGCCGCCGCCACTATGGCGACTCCGGTGGCCGTCACCCGGAGATACCCGCGGACGCCGCCGGTTGTCCCCGAAGACTGCCGCAGCGACTGCGACTCTTCGTCCTCCGTCGTCGAAGACGGCGACGGCGACAACGCGGCGTCGTCGTTTCGGCGAGAACCCTTGCCGTTCGATCTAAACTTGTTGCCGTTGGAGGATGCTGACGTGGCAAAAGGTGGCGTGGATAATGATATGTTCTGCACCGTTCTTTGTCTCTGA 624 0.6234 MGAGDAVESGSRPAFFKEQKYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDSAEDAARAYDAAARTLRGPKAKTNFPLPPPFYHPDPFTDHRYFAGSGEPFHDHRQPTSSGMSSTVESFSGPRAAATMATPVAVTRRYPRTPPVVPEDCRSDCDSSSSVVEDGDGDNAASSFRREPLPFDLNLLPLEDADVAKGGVDNDMFCTVLCL* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02573 207 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Lapu6g02573 207 MobiDBLite consensus disorder prediction 103 172 - -
Lapu6g02573 207 FunFam Ethylene-responsive transcription factor 2 19 78 - -
Lapu6g02573 207 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 20 166 - -
Lapu6g02573 207 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Lapu6g02573 207 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Lapu6g02573 207 Gene3D AP2/ERF domain 19 78 IPR036955 GO:0003700|GO:0006355
Lapu6g02573 207 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Lapu6g02573 207 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Lapu6g02573 207 CDD AP2 19 77 IPR001471 GO:0003700|GO:0006355
Lapu6g02573 207 MobiDBLite consensus disorder prediction 103 121 - -
Lapu6g02573 207 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02573 Lapu-Chr6 25776475 25777799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02573 17 207 AP2-EREBP Transcription Factor Family AT1G50640 58.937 5.97e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lapu6g02573 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02573 K09286 - gmx:100782025 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02573 6 25776475 25777799 Lapu6g02573 6 25776475 25777799 ECH
Lapu6g02573 6 25776475 25777799 Lapu6g02573 6 25776475 25777799 PCT