Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02572 ATGCTGATGTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTAGTAACTGTCGCCTATCACATGGAGTTGATGTTCACTTGTCTGCTCTTAAGCAATTTGTCCCTACAATCTGGAAGCAGTCCCTTGTCGGGTCAAGTATATGGGCAGTCTCAACTGCAAATGCTGGCACTTGGAGAGAAGCCGAGCTCGAGTCTTGGGACGAAAAGGTTGGAGTTGGACAAGTTGTTTTCCGAGATGACGGGAGTTCTGTGAAACTTGGTGCAGAAGAGATGGCACTGTCTGAGCATGCAGAAGTAAGTGACTCAGAGAGTGATTCCAGCTTGCAGCAATCTGAGTCCAGTGACTATGAGGAGGATGAGGAATCACAAGGTTTAGGATTTCTGGAGAGTACCAACCTACAGAGAGGGGTTCAACCTGAAACTGCAAAGTTTGCCACTTGGGAAAACCACACTAGAGGCATAGCTTCCAAAATGATGGCTAATATGGGGTATAGAGAAGGAATGGGTTTGGGTGTAACGGCAAAAGAGGAAGAGGAGTCGACATCAGATGTCTTTGCATTGATAAACAATCAGCTGGCAATGCACAGTGAGGCTTTCGGCGGTGGATCGACGAAGAAGCAGCACAATAAAGGTTCTGAGGAAGGTAAAAAGGTGGATAGACGGGCATTGGTTGCTTATGAGGAAGAGGTGAAGGATTTGAAGGTGAGGGTTGAAAAGCTTGAGCAGATTGTGAATGCCAATAAGAAAGAGAAGGCTGTGTATGAGGCTGCCATGAGAAAATTAAACGAAACCCGGAAAGCCTTGGCAGATGCCGAAGCAGTTCATGCCTCTGCCTCAAATGCAGTTGTTAGCAAAGAAAAAGAAAAGAGATGGCTCAAGTTTTAG 888 0.4583 MLMCKFFLQQRCRFGSNCRLSHGVDVHLSALKQFVPTIWKQSLVGSSIWAVSTANAGTWREAELESWDEKVGVGQVVFRDDGSSVKLGAEEMALSEHAEVSDSESDSSLQQSESSDYEEDEESQGLGFLESTNLQRGVQPETAKFATWENHTRGIASKMMANMGYREGMGLGVTAKEEEESTSDVFALINNQLAMHSEAFGGGSTKKQHNKGSEEGKKVDRRALVAYEEEVKDLKVRVEKLEQIVNANKKEKAVYEAAMRKLNETRKALADAEAVHASASNAVVSKEKEKRWLKF* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02572 295 MobiDBLite consensus disorder prediction 95 137 - -
Lapu6g02572 295 Coils Coil 224 275 - -
Lapu6g02572 295 Pfam CCCH-type zinc finger 3 23 IPR041367 -
Lapu6g02572 295 ProSiteProfiles G-patch domain profile. 152 172 IPR000467 GO:0003676
Lapu6g02572 295 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 174 - -
Lapu6g02572 295 SMART G-patch_5 150 198 IPR000467 GO:0003676
Lapu6g02572 295 MobiDBLite consensus disorder prediction 199 218 - -
Lapu6g02572 295 ProSiteProfiles Zinc finger C3H1-type profile. 3 25 IPR000571 GO:0046872
Lapu6g02572 295 Pfam G-patch domain 152 176 IPR000467 GO:0003676
Lapu6g02572 295 Gene3D - 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02572 Lapu-Chr6 25765512 25769358 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu6g02572 G-patch 1.4e-07 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02572 - - gmx:100794921 443.736