Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02556 ATGGCATCTTCAGATGACGAGGGAGAGGCTCAGCCGCTATCTGTGTCAAATTACTATTTTGAAGATGACAAAGATGTGCCGGTGTGTTTTTCTGTGTTGCCAATTCGGTGGAGTGACTCAGAGAGTCTAGTTGGCAAGAAAATACAGGTGTTTTTGCGTGGTTTTGCAGATAATGGACTGCAGAAAGTTTTCGTGCAAGTTGTTGCATGGAGGTTTGATCTTTCCTATGTGAGGCCTGAGATATCGGTGTTGTCAAAGGATGGGAAATGGATTAAACTTGAGAAGCCTAGGAAGAGCTATGAGGAAACCATAAGGACTATTTTGATCACCATTCACTTCCTGAGTTATGTGAAGAGGAATCCTGACTCATCTTCCAAGTCTGCGTGGGATAATTTGTGTAAGAATAAGGAGTTTAGATCTTATGAGGTTATGCCTTCGCACAATGATATATTAAATCATATTACTTTAATGGGTGAAGCTGCCATAAGAGATGATGGCTTAGCGAAGTCCAAGCTTTTGCGCATGGTTCGGGAAGATAAAGATAAGCTGAAGATTAAGAAACTTTCTGATGAGGAAGTTAAAGATTTAGCACGACCTGGATTTATAACTGATGATACTGACAATGATTTGATTGATGAAATTGGTGAAGATTCAGATGGAGAGGATGGGTTGTTTGATTCTGTTTGTGCGATTTGTGACAATGGTGGTGAACTTTTGTGTTGTGATGGAAAGTGCATGAGGTCGTTTCATGCTAATGAGGAGGATGGTGAAGAATCTGCTTGTGCCTCTCTTGGTTTCAGCCGGAAGGAAGTTAATGATATCCAGAACTTCTACTGTAAGAATTGTGAATATAATCAACATCAGTGCTTTGCATGTGGTACACTAGGCTGTTCTGATAAATTTTCTGGTGCTGAGGTCTTCAAATGTGCGTCTGCAACCTGTGGCTTCTTTTATCATCCACAATGTGTTGCAAAGTTACTTCACCGGGTAGTTGAGGAGGCTCCAGATCCGAAGGAACTTGAGAAAAATATTGCTAAAGGAGGAGCTTTTACTTGTCCTACTCATTATTGTTGTGTCTGTAAAGGAATGGAAGTAAAAAATGAACATGCTTTTCACTTTGCTGTTTGTAGGCGTTGCCCCAAGTCCTATCACCGCAAATGCTTGCCAAGAAAGATCGCATTTGATGACATAGAGGATGAAGAGATTGTAACAAGGGCTTGGGAAGACCTTCTACCAAACAATCGCATTCTTATATATTGTTTAAAACACGAGATTGATGATGAACTTGGAACTCCTACAAGGAATCATATAAAGTTTCCCAATGTAAAAGCTACTGTTCGAGAAGTTATTACTGTGGACAATGAAAAGCCTACAAACAAAGAGAGGGTTATACTGAACAAGAACAATAGTGTCTCAGAAAGTTTAATTGGCAAAAAAGCTTCTGCTAAATTTTCTAAACTGTCTGGTAAAATGTCTTCTGGAAAAGTTGGTGACAAGAAGTCTGAAAAGATTTCTGGATCAAGTATCTCAAGGAAGAAAACAAATGAGGCATCAAGAAGGGGTTTGAATGGAAATAAGAGACCATTAATCCCAAAGGAAACCAGAAAGTCTGACAGTGCAGAAAATAAGTCGTCATTGGGCACAAGATTATTTGCTTTTTGGCACAATGGTTCTGAGCAAATTAATTCTGGTAATCAGGTTGATAGTGTAGCTAATAATACCCAGCCTGTTAAGCCTACTAAAAAGCTGAGTAGTGCATTACCCTCATTAGATGAAGATGAAGAGAGGAGATTGGTGGCTATGTTTAAAGAAGCTACTTCATCAGTTACTTTGGAGGATGTTGTAAAAGAGCACAACTTTGCTACTACTCATACTCACTCGTTGAAAAATGTTGTAGAGAAGACCATTACGGTGGGCAAATTGGAAGGCTCAGTTGAGGCTGTTCGAACAGCTCTAAGGATGCTAGAGGATGGGCACAATATTCGGGATGCTGCAGCTGTTTGTGACCCTGATGTTCTTAACCAAATATTTAAATGGAAGGACAAGCTGAAAGTATATCTTGCTCCTGTTCTATATGGTAATCGCTACACTTCATTTGGCCGCCATTTCACACAAGTTGAAAAGCTGGAAGGGATTGTTGATAAACTGCATTGGTATGTTCAGAATGGTGATACAATAGTGGACTTTTGTTGTGGTGCTAATGACTTCAGCATTCTCATGAAGAAAAAGCTTGAAGAGACTGGGAAGAAATGCTCATACAAAAACTTTGATCTACTTCCAACGAAGAACGATTTTAATTTTGAGATGCGAGATTGGATGACTGTCCAAACAAAGGAGTTGCCTACAGGGTCAAAGTTGATCATGGGCTTAAATCCTCCCTTTGGACTTAAGGCAGCTTTGGCTAACAAGTTTATAGACAAAGCTCTCGAGTTCAGACCGAAGCTCATGATTCTCATAGTACCACCAGAGACAGAGAGGCTAGATGGCAAACGGCAGCCTTATGATCTTGTCTGGGAGGATGAGAGGTTTCTATCGGGCAAGTCATTTTATCTACCTGGATCAGTTGATGCTAATGACAGGCAAATAGAGCAATGGAATGTAAAGCCACCCCTACTGTACCTTTGGAGTCGTCCTGATTGGACCAGCAAGCACAAGGTCATAGCTCGGGAGCGTGGTCACCTGATCAGCCAACGTGAGGAGTCAAAAGTGGAAAGCTTTGATGAAGAAAAATCACCTGCCAGTCATACTAAGGAGGATAATTGTGGTGTCAATGTCATACGAGGTGATGACATCTTGAATTCAATTGATGCACCTATCAACAATGAAGGCCAGATGGGATACTCACCACATGGAAGTGTTGATCGAGGGAGTCAAGACAGACAGGAATATAGGGTGAGCAAGGCTGAGAAGACCTCATGGAAGAGGAAACGAACTGAGGAAAATGATGAAAGAGGAGTAGTAGGTGTGGCCTCACCACTCAATCCAATTGATGGGAGATCCTCAGTTGAACGTTTTCAGCCTAAACATGACATGCCACCTCCAGATTTTGAGCCTGGTGATAAAGGTTATAGGCATTTGGAGCCCATCACTTCCTCACATACAGGGGGAATTAGAGCAGCTTATAGCGGTACCCAAAATTGGCCAAGTGTTGCCAATCCCCTTTATGATTCTGGGGTTACAGGCGTAGATGGATACCATAGCAGCCTTATGAAAGACACCGGATATAGACCCTACGTCAGGGAGTATGAGAACAACCTAGAGACAAGGCAACATATTCGCCAATATGGTTCTCAGAATCCTAATAATGTGACGAGTAGTTATCTACTATCTGGTCAGGATCCTGCTTTTAGCCACCACACGGGGTCAAGTTATCCAGCCTATGGTTCATTATTTGAGTCTCCTTATGTTATGAATGCACCAGCCATGCAGCGATATGCACCTCGTCTGGACGAATTAAACCATGTAAGGATGGATCCTCTGGGGTCTGAGCCTCCTATACTTGGTAGAAATGGCACTGTTGAAGTTCCCCCACCTGGATATGGGAGTAGGATGCCAGGTTTTACTGGTGGTTCTTCTCACCATGTCTACTCACGCCAGAATTCATCTGACCGGTTCAAAGAGTAG 3624 0.4194 MASSDDEGEAQPLSVSNYYFEDDKDVPVCFSVLPIRWSDSESLVGKKIQVFLRGFADNGLQKVFVQVVAWRFDLSYVRPEISVLSKDGKWIKLEKPRKSYEETIRTILITIHFLSYVKRNPDSSSKSAWDNLCKNKEFRSYEVMPSHNDILNHITLMGEAAIRDDGLAKSKLLRMVREDKDKLKIKKLSDEEVKDLARPGFITDDTDNDLIDEIGEDSDGEDGLFDSVCAICDNGGELLCCDGKCMRSFHANEEDGEESACASLGFSRKEVNDIQNFYCKNCEYNQHQCFACGTLGCSDKFSGAEVFKCASATCGFFYHPQCVAKLLHRVVEEAPDPKELEKNIAKGGAFTCPTHYCCVCKGMEVKNEHAFHFAVCRRCPKSYHRKCLPRKIAFDDIEDEEIVTRAWEDLLPNNRILIYCLKHEIDDELGTPTRNHIKFPNVKATVREVITVDNEKPTNKERVILNKNNSVSESLIGKKASAKFSKLSGKMSSGKVGDKKSEKISGSSISRKKTNEASRRGLNGNKRPLIPKETRKSDSAENKSSLGTRLFAFWHNGSEQINSGNQVDSVANNTQPVKPTKKLSSALPSLDEDEERRLVAMFKEATSSVTLEDVVKEHNFATTHTHSLKNVVEKTITVGKLEGSVEAVRTALRMLEDGHNIRDAAAVCDPDVLNQIFKWKDKLKVYLAPVLYGNRYTSFGRHFTQVEKLEGIVDKLHWYVQNGDTIVDFCCGANDFSILMKKKLEETGKKCSYKNFDLLPTKNDFNFEMRDWMTVQTKELPTGSKLIMGLNPPFGLKAALANKFIDKALEFRPKLMILIVPPETERLDGKRQPYDLVWEDERFLSGKSFYLPGSVDANDRQIEQWNVKPPLLYLWSRPDWTSKHKVIARERGHLISQREESKVESFDEEKSPASHTKEDNCGVNVIRGDDILNSIDAPINNEGQMGYSPHGSVDRGSQDRQEYRVSKAEKTSWKRKRTEENDERGVVGVASPLNPIDGRSSVERFQPKHDMPPPDFEPGDKGYRHLEPITSSHTGGIRAAYSGTQNWPSVANPLYDSGVTGVDGYHSSLMKDTGYRPYVREYENNLETRQHIRQYGSQNPNNVTSSYLLSGQDPAFSHHTGSSYPAYGSLFESPYVMNAPAMQRYAPRLDELNHVRMDPLGSEPPILGRNGTVEVPPPGYGSRMPGFTGGSSHHVYSRQNSSDRFKE* 1208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02556 1207 MobiDBLite consensus disorder prediction 493 520 - -
Lapu6g02556 1207 MobiDBLite consensus disorder prediction 562 582 - -
Lapu6g02556 1207 MobiDBLite consensus disorder prediction 955 984 - -
Lapu6g02556 1207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 404 IPR013083 -
Lapu6g02556 1207 MobiDBLite consensus disorder prediction 1002 1019 - -
Lapu6g02556 1207 SMART PHD_3 228 283 IPR001965 -
Lapu6g02556 1207 SMART PHD_3 357 424 IPR001965 -
Lapu6g02556 1207 SMART PHD_3 288 356 IPR001965 -
Lapu6g02556 1207 CDD PHD2_NSD 288 355 - -
Lapu6g02556 1207 MobiDBLite consensus disorder prediction 1161 1207 - -
Lapu6g02556 1207 MobiDBLite consensus disorder prediction 487 543 - -
Lapu6g02556 1207 MobiDBLite consensus disorder prediction 939 1019 - -
Lapu6g02556 1207 MobiDBLite consensus disorder prediction 562 589 - -
Lapu6g02556 1207 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 5 913 - -
Lapu6g02556 1207 Pfam Cytosine specific DNA methyltransferase replication foci domain 15 129 IPR022702 -
Lapu6g02556 1207 MobiDBLite consensus disorder prediction 898 921 - -
Lapu6g02556 1207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 225 285 IPR013083 -
Lapu6g02556 1207 MobiDBLite consensus disorder prediction 898 916 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02556 Lapu-Chr6 25524282 25541973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02556 226 329 PHD Transcription Factor Family AT3G14980 31.731 4.44e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02556 - - gmx:100803073 1937.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02556 6 25524282 25541973 Lapu6g02556 6 25524282 25541973 ECH
Lapu6g02556 6 25524282 25541973 Lapu6g02556 6 25524282 25541973 PCT