Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02529 ATGGAATCGGATCTTGGCAAGCTCTTCATAGGGGGAATATCTTGGGACACTGATGAGGAACGGCTTAAGGAATATTTTGGGAAATATGGGGAGGTGATAGAGGCTGTGATCATGAGGGATCGCGTAACAGGTCGTGCTCGCGGCTTTGGTTTTGTTGTCTTTGCTGATCCTTCTGTTGCAGAAAGAGTAATCATGGATAAACACATAATTGATGGGCGCACAGTTGAAGCTAAGAAAGCTGTTCCTAGGGATGATCAGCTCAATATAAATAGGCAATCTGGTAGTGCACACGCATCTCCTGGTCCTGGACGCACCAAAAAAATCTTTGTTGGAGGTTTACCATCAACAATCACTGAAAGTGATTTTAAGAAGTATTTTGATCAGTTTGGTACAATTACAGATGTTGTAGTTATGTATGATCATAATACCCAGAGGCCAAGAGGTTTTGGCTTCATCACCTATGATTCTGAAGAAGCTGTGGATAGAGTTCTTTATAAAACTTTTCATGAACTCAATGGTAAGATGGTTGAAGTCAAGAGGGCAGTTCCCAAAGAGCTTTCCCCTGGTCCCAACCGAAGCCCGTTGATAGGATATAACTATGGTTTGAATAGGGCCAGTAGCTACCTAAACAGTTATGCTCAGGGTTATAGTATGAGTCCAATAGGAGGATATGGAATGAGGATGGATGGTAGGTTTAGTCCTCTTAGTGGTGGAAGAAGTGGATTTACTCCCTTTAGCAACACCGGTTATGGAATGGGAGTGAATTTGGATTCAGGATTGAGCCCAACCTTTGGAGGGACTTCCAATTATGGGAGCAATCTAGGATATGGTCGACTATTGAATCCTTTCTACAGTGGCAACTCTGGCAGATATACCACGCCTATAGGCTATAGTGGGGTTAATGGGAGAAGCGATTCTCTTATGAACTCACCTTCTCGGAATTTATGGGGAAATGGGGGCCTCAATAATGCCAGTAATCCTGTCAGCCCCAGCCCTTTCCTAGGATCTGGAAGTGGAGCTTTTGGTGTTTCAATTGGAAATAGTGGCACAGGCTGGGGTCTATCCATTCCAGCCCAGGGTGGAGGTGCTGCTTCTGGTTATGGTACTGGGAGTAATGTTTATGAAGGTGGAGATAGCAGCTTTGGTCTAGGTGGGGCAGGGTATGGAAGAAACAGCAGTTCCGGTGTGACTCCATCCTCTACATTTAATGCGTCAACTGGTGGTTATGAAGGATCATATGGGGACTTGTACCGTACCGGCAGTGGTTCAGTTTACAATGACTCTGCTTGGCGTTCTGCTGTATCTGAGATTGATGGTTCTGGCTCATTTGGTTATGGTCTTGGTGGTATAGCTTCAGATGATCCAGTAAAGAATTCTGAGGGTTATATTGGAAACTACAATGTTACTAGTAGACAACCTAGTAGAGGTAAGACTGTGAGCTACATTCTTGTCTCCAAAAGAAAATCAGATTATTATTGGTCAATTCTTGCCTATGATGTGCTGTTGTGGCAACTGTTTGATGAAAATAACATAACTGTTGTTGAATTGCTTGGAACAAAGTTGATTGGTTGCATGCAACTAGTGGGTATGCATGACTCAATATAG 1605 0.4349 MESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRVTGRARGFGFVVFADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQLNINRQSGSAHASPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPNRSPLIGYNYGLNRASSYLNSYAQGYSMSPIGGYGMRMDGRFSPLSGGRSGFTPFSNTGYGMGVNLDSGLSPTFGGTSNYGSNLGYGRLLNPFYSGNSGRYTTPIGYSGVNGRSDSLMNSPSRNLWGNGGLNNASNPVSPSPFLGSGSGAFGVSIGNSGTGWGLSIPAQGGGAASGYGTGSNVYEGGDSSFGLGGAGYGRNSSSGVTPSSTFNASTGGYEGSYGDLYRTGSGSVYNDSAWRSAVSEIDGSGSFGYGLGGIASDDPVKNSEGYIGNYNVTSRQPSRGKTVSYILVSKRKSDYYWSILAYDVLLWQLFDENNITVVELLGTKLIGCMQLVGMHDSI* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02529 534 SMART rrm1_1 107 179 IPR000504 GO:0003723
Lapu6g02529 534 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lapu6g02529 534 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Lapu6g02529 534 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Lapu6g02529 534 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Lapu6g02529 534 Gene3D - 6 87 IPR012677 -
Lapu6g02529 534 MobiDBLite consensus disorder prediction 86 105 - -
Lapu6g02529 534 CDD RRM2_Hrp1p 107 184 - -
Lapu6g02529 534 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Lapu6g02529 534 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Lapu6g02529 534 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Lapu6g02529 534 SUPERFAMILY RNA-binding domain, RBD 4 103 IPR035979 GO:0003676
Lapu6g02529 534 Gene3D - 105 185 IPR012677 -
Lapu6g02529 534 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 473 - -
Lapu6g02529 534 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Lapu6g02529 534 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02529 Lapu-Chr6 25280921 25285933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02529 5 180 Eukaryotic Initiation Factors Gene Family AT2G23350 23.596 3.49e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02529 K14411 - gmx:100794390 895.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02529 6 25280921 25285933 Lapu6g02529 6 25280921 25285933 ECH
Lapu6g02529 6 25280921 25285933 Lapu6g02529 6 25280921 25285933 PCT