Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02525 ATGCAAACATCTCAGAATCATAAAATTTCTTATGGCACTGGTGGGTTCTATGTTGAGCCTGTGCAAAATTTGGAGTCATATTGCTTACCATCTAGTGAGAACATAGACAATTACTCTTCCTCTGATAACAGCAGCCAAACAACCTACCCTTCAGTCCAAACTTTAGAGCAATATTGCACCCTTGAATCTGCTTCCACAAGCAACAGTTTCCCTTGCCAAAATTCTCCACCTGCTCTCAGTTTCTCATCAAACAATAGTCCATTGTCAAAGCTAGAGTCAAATTCATACGTGTTAAGGCCACAGCATTCTCTTGAAATTGCTAGTGGCCCACCAGAGGATGATTCTTACCCGACTCTTGACCTTGATGACCTGACACATAAGATAAGAGAGCTGGAAACTGCTATGCTGGGACCTAATGCAGATATGCTAGACATCTATGGCACTATAATGCCAGGAGAAGCTGATTCAATTTTGTTAGAGGCCGAGAAGTGGAAGAAAATGATGGAGATGATATCTAGAGGGGATTTGAAAGAGATGCTTTATACTTGTGCAAAGGCAATGGCTGTGAATGATATGGAGACAACTGAATGGATGATGTCAGAGTCGCGGAAGATGGTTTCCGTTTCAGGAAATCCAATTCAGCGATTAGGAGCATACGTTGTGGAGTCTCTTGTAGCAAGGATGGCTGCATCAGGAAGCACAATCTACAAATCCTTGAAATGTAGTGAGCCTACTGGTAATGAACTACTTTCCTACATGCATGTACTCTATGAAGTTTGTCCATACTTCAAGTTTGGGTACATGTCTGCAAATGGAGCAATTGCTGAAGCTCTGAAGGAGGAAAGTGAAGTCCACATAATAGACTTTCAGATTTCCCAGGGAACTCAATGGGTGAGCCTGATTCAGGCTCTTGCTCGCCGTCCTGGAGGGCCACCAAATATCAGAATATCAGGTGTTGATGACTCCTTTTCATCTTATGCCCGGGGAGGAGGACTTGATATTGTTGGGAAAAGGTTATCAGCACTTGCAGAGTCATGTAATGTACCCTTTGAGTTCAATGCTGTGAGAGTACCTGCTTCTCAAGTGCAACTTAAAGACCTTGATCTTCGCCCTTATGAAGCTGTGGCAGTGAACTTTGCCCTTATGTTGCACCATGTGCCTGATGAAAGTGTGAACCGCCACAATCATCGGGATCGATTGTTGAGATTGGCCAAGCACTTGTCTCCTAAGGTGGTGACTCTTGTTGAGCAAGAATTTAACACCAATCACGCGCCATTCTTGCAGCGATTCTTTGAGACAATGAACTACTACTTGGCTGTTTTTGATTCAATCGATGCTGCTCTTCCAAGGGAGCACAAAGAGAGGATTAATGTGGAGCAGCATTGTTTGGCTCGTGAAGTTGTCAACTTAATAGCATGTGAAGAAGAAGAAAGAGTTGAACGTCACGAGCTTCTGAATAAGTGGAGAATGCGTTTCACAATGGCTGGATTTACGCCCTATCCACTGAACTCCGTTATTAATTCTTCAATCAAGGATCTTCTCCAGAGCTACCATGGTCACTACTCTCTAGAAGAGAAAGATGGTGCACTATTTCTTGGTTGGAAGAATCAAGTTCTTATAGCCTCTTGTGCTTGGAGATGA 1641 0.4327 MQTSQNHKISYGTGGFYVEPVQNLESYCLPSSENIDNYSSSDNSSQTTYPSVQTLEQYCTLESASTSNSFPCQNSPPALSFSSNNSPLSKLESNSYVLRPQHSLEIASGPPEDDSYPTLDLDDLTHKIRELETAMLGPNADMLDIYGTIMPGEADSILLEAEKWKKMMEMISRGDLKEMLYTCAKAMAVNDMETTEWMMSESRKMVSVSGNPIQRLGAYVVESLVARMAASGSTIYKSLKCSEPTGNELLSYMHVLYEVCPYFKFGYMSANGAIAEALKEESEVHIIDFQISQGTQWVSLIQALARRPGGPPNIRISGVDDSFSSYARGGGLDIVGKRLSALAESCNVPFEFNAVRVPASQVQLKDLDLRPYEAVAVNFALMLHHVPDESVNRHNHRDRLLRLAKHLSPKVVTLVEQEFNTNHAPFLQRFFETMNYYLAVFDSIDAALPREHKERINVEQHCLAREVVNLIACEEEERVERHELLNKWRMRFTMAGFTPYPLNSVINSSIKDLLQSYHGHYSLEEKDGALFLGWKNQVLIASCAWR* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02525 546 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 127 541 IPR005202 -
Lapu6g02525 546 ProSiteProfiles GRAS family profile. 167 546 IPR005202 -
Lapu6g02525 546 Pfam GRAS domain family 176 546 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02525 Lapu-Chr6 25224425 25227754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02525 1 546 GRAS Transcription Factor Family AT1G50600 56.522 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lapu6g02525 GRAS 5e-130 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02525 - - gmx:100785400 967.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02525 6 25224425 25227754 Lapu6g02525 6 25224425 25227754 ECH
Lapu6g02525 6 25224425 25227754 Lapu6g02525 6 25224425 25227754 PCT