Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02520 ATGTTGTTTGTCTCATCACTCCATTCTCTTACTCTTAGACACTTCGGCAGTAGTTTCCTGACATATTTAGTGAAGCCGGTTTTCTTCCATGGCTTCTCTGGTTTCCTTCATCTACTGTTATTGGTGGTGCTTTTAGTGTCGCTGGTGTGGAGGAAAGTCACAGTTGGAGCCAGAGAAAGTTCCAAAGAGAACATTACTAATACCTTGTTTGCAAAGGGTCCCCTTTGTTCTCTTCTTGTTTCGGCTTTCAATCTTCTACTCTTTTTGTTTGATTACTTTTGTTGGTATAAAAATGGTTGGTCAGAAGAAAAGCTTGCGACCCTTTTGGATTTTCTACTCAAAACAATTGCTTGGGGTGTTGGTGGTGTTTGCTTGCACAGGGAACTCTTCATTTCAAGGGGAAGAAGATTACCATTCTTCTTCAGAGCATGGTGCTTCCTTTCCCTCTTTGTTTCCGGCTATTGCTTTATAGTGGACTTTGCTCTCTATGAAAAAAAGCTTTGTGCTTTGCCCATTCAGAGCTTAGTTTCTGATGCTTTCTCTGTTTGTGCGTGTTTATTCTTCTTTTGCTTGGGATTGTTTGTAAAAAACGAGGGTGGAGTAGGAGATAGTACTCTTCAAGAATCTCTTTTGGATGGTGACTCAAAAGATGACGTGTTTGGGACAAAAGAGACCAAGGGGGGTGACACTGTTACACCTTACTCTAATGCTGGAATATTTGGCCTTCTTACCTTCTCTTGGATTGGTCCTCTGATTACTGTTGGCAAGAAAAAGTCTTTGGACCTTGATGATGTCCCCCAACTTGATATAAGAGACAGTTTAACTGGAGCTTTTCCAACTTTTAGGGATAGACTTGAGGCACAATGTGGAGCTGTTAACGCAGTGACCACACTTATGTTAGTGAAGTCATTAGTATTCTCAAGCTGGAAAGAGATTATTTTCACAGCCATCCTTGCATTGCTCAACACATTGGCTTCTTTTGTTGGTCCCTATCTTATTGATGGTTTTGTTCACTTCCTTAACGGACAACGGAAATTTGAGCACGAGGGCCTTATGTTAGTGTCTGCATTTTTTGTGGCAAAGCTTTTAGAAGGCCTCACAAAGAGGCACTGGTTTTTTAGGTTGCAGCAGGTTGGAATACGAATGCGAGCACTGCTTGTGACTATGATATACAATAAAATTTTGAATCTTTCATGTCAATCCAAGCAGGGGCACACTACTGGGGAAATAATCAACTTCATGACCGTTGATGCAGAAAAAGTTGGTGAGTTCAGTTGGCATCTGCATGATCTGTGGTTAGTAGTTCTACAGGTTATAGTAGCCTTGTTGATTTTGTATAGAAATCTTGGGCTTGCTTCAATTTCTGGCCTTGTTGCAATTCTCATTGTAATGTGGGCAAACATTCCCTTGGGTTCAATCCAAGAGAAGTTTCATAACAAGTTGATGGAGTCAAAAGATGCAAGAATGAAAACAACATCTGAGATTTTGAGGAACATGAAGATTCTAAAACTACAAGGATGGGAAATGAAGTTTTTGTCTAACATAACCGAACTCAGAAAGATCGAGCAAGACTGGTTAAAAAAAGTTATATACACTTTAGCCATGATCATATTCGTATTTTGGTGTGCCCCGGCATTTGTTTCAGTGGTTACTTTTGGTACTTGTATACTTGTAGGGATCCCCCTTGAATCAGGGAAGATCCTGTCTACACTTGCAACATTCCAGATTCTCCAAGAACCCATTTATAATCTTCCAGAGACAATTTCAATGATGGCACAAACTAAGGTTTCTCTTGACAGGATTGCATCTTTCCTTCGTCTGGATGAGATGCCATTTGATGTTGTGGAGAAGCTTCCAGTAGGTAGTTCTAATATAGCTATTGAAGTAGTTAATGGGAATTTCTCTTGGGATTTATTTTCCCATAGTACAACATTGCAAAACATAAATCTCAGAATTTTTCATGGCATGAGGGTTGCTGTTTGTGGTAGTGTTGGATCAGGAAAGTCTACTTTTCTTTCTTGTATATTGGGAGAAGTGCCTAAGAAATCAGGGATTTTGAAGGTGTGTGGAAGAAAGGCCTATGTAGCTCAGGCACCGTGGATACAGAGTAGCACGATAGAGGATAATATATTGTTTGGCAAGGACATGGAAAGGGAAAGGTATGAGAAGGTTCTTGAAGCTTGTTGCTTAAAGAAGGATCTAGATATTTTGCCATTTGGAGATCAAACTATAATAGGAGAGAGGGGGATAAATTTGAGTGGTGGACAGAAACAAAGAATACAAATTGCTCGTGCTCTATACCATGATGCTGATATATATCTATTTGATGATGTGTTTAGTGCTGTGGATGCTCACACAGGATCTCATCTTTTTAAGGAATGCTTACTCGACCATTTAAGTTCAAAGACAGTGGTTTATGTCACTCATCAAGTAGAGTTCTTACCTGCTGCTGACCTTATTTTGGTCTTGAAAGATGGGAAGATTACTCAATGTGGAAAATATAATGATCTGCTCAGCTCAGGCACTGATTTTATGGAACTTGTTGGTGCTCATAAAGAAGCTTTGTCTGCACTTGATTCAATAGAAGAATGGAAAGCGTCTGATAGAACAAGTACATCACAAGAGGATGTAAATATAGTTGTTTGTCATGGTATTGAAGAAAAGGAAGTAAAGAAAAATGAGAAAAATGGTGGAGAAGATAACAAATGTGATCCAAAAGGCCAGCTTATTCAAGAAGAAGAAAGAGAGAAAGGTAAAGTCGGGTTTTTAGTTTACTGGAAATATGTAACAACAACATATGGAGGAGCACTTGTACCACTCATATTGTTGGCTGAAATTTCATTTCAACTTCTTCAAATTGGAAGCAACTATTGGATGGCTTCGGCAACTCCTATCTCAACTGATGCGGAGCCACCTGTTGGAGGAAGTGCCCTTATACTTGTATATATAGCTTTGGCCATAGGGAGTTCTATCTGTGTCCTTGCTAGAGCAACACTTGTTGCCACAACTGGTTATAAGACAGCTACTGTACTGTTCAACAACATGCATTTCTGCATTTTCCGTGCTCCAATGTCATTTTTCGATGCTACTCCAAGTGGGAGAATCCTTAATAGGGCTTCTACTGACCAAAGTGCAGTGGATATAGACATTCCTTTTCAAACAGGATCGTTTGCTTCCTCTGTGGTCCATCTTCTCGGAATTGTAGCAGTAATGTCTCAAGTTGCATGGCAGGTTTTCATTGTGTTTATTCCTATTACAGCAATCAACATTTGGTATCAGCAACATTATTTACCATCAGCCCGGGAATTATCACGCTTAGTTGGGGTATGCAATGCACCTGTCATTCAGCACTTTGCTGAAACAATATCAGGTGCATCAACCATTAGGAGCTTTGATCAGGTACCAAGATTTCAGCAAACAAATATGAAACTGATGGATGGATATTCTCGCCCGAAGTTCAACAATGCTGCTGCAATGGAATGGTTGTGTTTCCGATTAGATATGTTGTCTTCTATCACATTTGTCTTTTGCTTGATATTCTTGATATCTATTCCACATGGATTCATAGATTCAGGTATTGCTGGTTTAGCTGTAACCTATGGCCTTAATCTGAACATTATACAATCATGGATGATATGGGAACTTTGCAGCTTGGAGACCAAAATTATATCAGTGGAAAGAATTCTTCAGTATACTTCTATTCCCAGTGAGCCTCCTCTTCTTGTAGAGGAAAACCGGCCACATGATTCTTGGCCATCATGTGGCAGGATTGATATTCACAACTTGCAGGTACGATACGCTCCACATATGCCATTTGTGTTGCATGGCTTTACATGCACATTTCATGGAGGACATAAAACTGGAATTGTTGGAAGAACAGGAAGTGGCAAATCAACTCTCATACAAACACTATTCCGAATTGTTGAGCCTACTGTTGGGAGAATTATGATTGATGACATCAACATCTCGTCCATTGGACTTTATGATTTGAGGTCTAAACTGAGCATTATCCCTCAGGATCCAACCATGTTTGATGGTACTGTGAGAAGTAATCTGGACCCACTTGAAGAGTACACAGATGAACAAATTTGGGAGGCCCTTGATAAGTGTCAACTTGGAGATGAAGTCAGAAGGAAAGAAGGAAAACTAGACTCTTCAGTATGTGAGGATGGAGAGAATTGGAGTATGGGCCAAAGGCAATTGGTGTGTCTTGGTAGGGTGCTGCTTAAGAAGAGTAAGGTCTTGGTGCTAGATGAAGCTACTGCATCAGTTGACACAGCTACAGATAATTTGATTCAGCAAACTCTCAGGCAATATTTTTCTGATTGCACAGTCATTACTATTGCCCATAGAATAACCTCTGTCATTGATAGTGATATGATTTTACTACTGAATCAAGGACTTATTGAGGAGTATGATTCCCCAGCAAGGTTGCTAGAGGACAAGTTTTCTTCTTTTGCTCAACTTGTGGCAGAGTATACCACAAGGTCCAATTCCAGTTTTGACCAAGTAAACTAA 4518 0.3991 MLFVSSLHSLTLRHFGSSFLTYLVKPVFFHGFSGFLHLLLLVVLLVSLVWRKVTVGARESSKENITNTLFAKGPLCSLLVSAFNLLLFLFDYFCWYKNGWSEEKLATLLDFLLKTIAWGVGGVCLHRELFISRGRRLPFFFRAWCFLSLFVSGYCFIVDFALYEKKLCALPIQSLVSDAFSVCACLFFFCLGLFVKNEGGVGDSTLQESLLDGDSKDDVFGTKETKGGDTVTPYSNAGIFGLLTFSWIGPLITVGKKKSLDLDDVPQLDIRDSLTGAFPTFRDRLEAQCGAVNAVTTLMLVKSLVFSSWKEIIFTAILALLNTLASFVGPYLIDGFVHFLNGQRKFEHEGLMLVSAFFVAKLLEGLTKRHWFFRLQQVGIRMRALLVTMIYNKILNLSCQSKQGHTTGEIINFMTVDAEKVGEFSWHLHDLWLVVLQVIVALLILYRNLGLASISGLVAILIVMWANIPLGSIQEKFHNKLMESKDARMKTTSEILRNMKILKLQGWEMKFLSNITELRKIEQDWLKKVIYTLAMIIFVFWCAPAFVSVVTFGTCILVGIPLESGKILSTLATFQILQEPIYNLPETISMMAQTKVSLDRIASFLRLDEMPFDVVEKLPVGSSNIAIEVVNGNFSWDLFSHSTTLQNINLRIFHGMRVAVCGSVGSGKSTFLSCILGEVPKKSGILKVCGRKAYVAQAPWIQSSTIEDNILFGKDMERERYEKVLEACCLKKDLDILPFGDQTIIGERGINLSGGQKQRIQIARALYHDADIYLFDDVFSAVDAHTGSHLFKECLLDHLSSKTVVYVTHQVEFLPAADLILVLKDGKITQCGKYNDLLSSGTDFMELVGAHKEALSALDSIEEWKASDRTSTSQEDVNIVVCHGIEEKEVKKNEKNGGEDNKCDPKGQLIQEEEREKGKVGFLVYWKYVTTTYGGALVPLILLAEISFQLLQIGSNYWMASATPISTDAEPPVGGSALILVYIALAIGSSICVLARATLVATTGYKTATVLFNNMHFCIFRAPMSFFDATPSGRILNRASTDQSAVDIDIPFQTGSFASSVVHLLGIVAVMSQVAWQVFIVFIPITAINIWYQQHYLPSARELSRLVGVCNAPVIQHFAETISGASTIRSFDQVPRFQQTNMKLMDGYSRPKFNNAAAMEWLCFRLDMLSSITFVFCLIFLISIPHGFIDSGIAGLAVTYGLNLNIIQSWMIWELCSLETKIISVERILQYTSIPSEPPLLVEENRPHDSWPSCGRIDIHNLQVRYAPHMPFVLHGFTCTFHGGHKTGIVGRTGSGKSTLIQTLFRIVEPTVGRIMIDDINISSIGLYDLRSKLSIIPQDPTMFDGTVRSNLDPLEEYTDEQIWEALDKCQLGDEVRRKEGKLDSSVCEDGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQYFSDCTVITIAHRITSVIDSDMILLLNQGLIEEYDSPARLLEDKFSSFAQLVAEYTTRSNSSFDQVN* 1506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02520 1505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1248 1482 IPR027417 -
Lapu6g02520 1505 ProSitePatterns ABC transporters family signature. 752 766 IPR017871 GO:0005524|GO:0016887
Lapu6g02520 1505 CDD ABC_6TM_ABCC_D2 938 1232 IPR044726 GO:0140359
Lapu6g02520 1505 Pfam ABC transporter 645 778 IPR003439 GO:0005524
Lapu6g02520 1505 FunFam ABC transporter C family member 5 612 859 - -
Lapu6g02520 1505 CDD ABCC_MRP_domain2 1255 1475 - -
Lapu6g02520 1505 Gene3D - 1240 1493 IPR027417 -
Lapu6g02520 1505 FunFam ABC transporter C family member 3 1240 1492 - -
Lapu6g02520 1505 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 627 850 IPR003439 GO:0005524
Lapu6g02520 1505 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 940 1220 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu6g02520 1505 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 234 1492 - -
Lapu6g02520 1505 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1259 1491 IPR003439 GO:0005524
Lapu6g02520 1505 SUPERFAMILY ABC transporter transmembrane region 304 611 IPR036640 GO:0005524|GO:0016020
Lapu6g02520 1505 Gene3D - 616 873 IPR027417 -
Lapu6g02520 1505 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 313 593 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu6g02520 1505 CDD ABCC_MRP_domain1 627 827 - -
Lapu6g02520 1505 FunFam ABC transporter C family member 10 296 609 - -
Lapu6g02520 1505 FunFam ABC transporter C family member 5 901 1238 - -
Lapu6g02520 1505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 624 849 IPR027417 -
Lapu6g02520 1505 SMART AAA_5 654 827 IPR003593 GO:0016887
Lapu6g02520 1505 SMART AAA_5 1283 1468 IPR003593 GO:0016887
Lapu6g02520 1505 Pfam ABC transporter transmembrane region 313 580 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu6g02520 1505 Pfam ABC transporter transmembrane region 941 1182 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu6g02520 1505 Pfam ABC transporter 1275 1422 IPR003439 GO:0005524
Lapu6g02520 1505 SUPERFAMILY ABC transporter transmembrane region 939 1239 IPR036640 GO:0005524|GO:0016020
Lapu6g02520 1505 CDD ABC_6TM_ABCC_D1 314 601 IPR044746 GO:0140359
Lapu6g02520 1505 Gene3D ABC transporter type 1, transmembrane domain 293 610 IPR036640 GO:0005524|GO:0016020
Lapu6g02520 1505 Gene3D ABC transporter type 1, transmembrane domain 900 1238 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02520 Lapu-Chr6 25153592 25160291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02520 627 878 Calmodulin-binding Proteins AT2G36910 30.882 2.70e-27 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02520 - K05666 gmx:100775358 2474.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02520 6 25153592 25160291 Lapu6g02520 6 25153592 25160291 ECH
Lapu6g02520 6 25153592 25160291 Lapu6g02521 6 25174792 25180761 PCT