Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02507 ATGGGCGTCAACAATCGCTGTTTTGTGGAATGGAAAGAGCAGTTTATTTCACAGGAACGTGGTAATCGTGTGGTTCACTATTACCTGAAGGATGCTGCTGGGGAATCTGTCCTTGCAGTGGTGGGTACTGAGAGGAGCGTTAGGCACATGTGTTATGTTGTTGCTGAGGAGTTCCTTGAAATTTGTGGTAAGGAAGGTTCCATTCCAACTGGTTTCAAATGGCGATCTAGAAGAGAGGTGGTGGATTGGCTGACATCAACTCTATCAAAGCAGACCCTGCAGCGAGATAGAAGTGTATCACCTGGTCATAACTTGGTACAAGCTCAAGAGACAACATATGACAGTATCAATGAAATTACTGGTGCACAAATAACTGATGATCAGGACTTTCCCATGAGTAAATCCAAGTTATCCAATTCAGACATTGTTTGGTCTGGAGTTGCGTGGAGATGTGGCAAACAACTTAAGCATTATCCTGCATTTTGGAGGAATGGCATCAAAATTGCGATTCAATCCTTTGTTTTTGTTATGGGCAAGGGAGAGAATCATTATATTGCTTATGTAGAGGATATGTATGAAGACAGGAGGGGTCAGAAAAAAGTCAAGGTGAGGTGGTTTCACCATAATCAGGAAGTCAAGGGTGTAGTTCCAGTACGAAATCCTCACCCTCGCGAAGTTTTTATCACACCTTATTCTCAAGTCATCAGTGCAGAGTGCGTAGATGGTCCTGCCACAGTCTTGACTCGTGAACACTATGAAAAGTGCATGTCTTTTTTTTCGCCCACTTCGAGGGACAGAACACATTTGTGCTTTAGGCAATTTAGAAGCAACAAAGTGAAGCCCTTTGACTTGAGTAAACTGCGTGGCTACTATGCTCAACCGATTCTTTCTTGCTTGCACCTTGATTCAGTTCAGAACCCTGAGAGCCTTGCAGGAGAAAATGAAGACTTGAGTGCAGGTGATGATGTGAAGGTAGGAGCCAAGAGGAGCAGAAATGATAAGGGGTCTCCTCAGTCTTGGATCAGTAAACAGGGAGTTAGGAAATTGATAAGAAGTAAGCAAATGATGGTATACAAAACCTTCCAGGTTGCAAATTATGCAAGACCAGAAAGGAGATTGCTTTCCCGGAAGCAGGTTGAGTGTCAACCTTGGTCTAATCACACATACAAGGTTGATGACAAGATTGAGTTGCTTTGTCAAGATAGTGGCATCAGGGGCTGCTGGTTCAGGTGTACAGTTGTTCAGGTAGCCCGGAAACAGTTGAAAGTCCTATATGAAGACGTCCAGGATGAAGATGGAAGTGGAAATCTGGAGGAATGGGTCCCTGCTTTCAAGTTTGCCAGGCCCGATAAACTTGGGATGAGGCATTCTGGCCGGCCCACCATCAGACCTACTCCAACTCATGAGGAACAAGAACTGGCTGTTGAGGTTGGACATGCAGTTGATGCATGGTGGAGTGATGGCTGGTGGGAGGGGGTTGTAACTAGAATTGATCACTGTGGAGATGATACTGTTCAAGTATACTTTCCTGGAGAATGCCTGTTGATGGAAGTGTGCAGGAAGGATTTAAGAATTTCTAGAGATTGGTTAGGGGACAGTTGGATTAACATTAAGGCAAAACCTGAAATAACTAGAACTATATTCTTCACAGCTAATAATAGCTTTAACACAAAGCTTTCCGTGTCCCCATCAATTGACAAAGTCGCGGACACTGTTGGTTTTGGTAATTCATGTCATGGTGATCCTTTTAGTAAGAAGTGTGATGAACTGGCTATTGAAGACGAGAAACATTTGTCTTGTGAGGGCTTCGCTGAAGATGGGTTCTGTGTCCCGGATAATAAACCCTCTTCAGGAAAAAATACTGAAGCTGATAATATTGAGATACATGGCTGTTGTGATGATGAAGATAAAGGTGACGAGCATGACAAAGTTAACAATGATGATGATAGTAACAAGAATGGTGATAATACTGGTAATAAAGATATCAAGGTGTTTGGAACTTCTGGGCTGAACCGGGAACATGTAGAGCTCATGGAAGTGGCTGTATAA 2049 0.4329 MGVNNRCFVEWKEQFISQERGNRVVHYYLKDAAGESVLAVVGTERSVRHMCYVVAEEFLEICGKEGSIPTGFKWRSRREVVDWLTSTLSKQTLQRDRSVSPGHNLVQAQETTYDSINEITGAQITDDQDFPMSKSKLSNSDIVWSGVAWRCGKQLKHYPAFWRNGIKIAIQSFVFVMGKGENHYIAYVEDMYEDRRGQKKVKVRWFHHNQEVKGVVPVRNPHPREVFITPYSQVISAECVDGPATVLTREHYEKCMSFFSPTSRDRTHLCFRQFRSNKVKPFDLSKLRGYYAQPILSCLHLDSVQNPESLAGENEDLSAGDDVKVGAKRSRNDKGSPQSWISKQGVRKLIRSKQMMVYKTFQVANYARPERRLLSRKQVECQPWSNHTYKVDDKIELLCQDSGIRGCWFRCTVVQVARKQLKVLYEDVQDEDGSGNLEEWVPAFKFARPDKLGMRHSGRPTIRPTPTHEEQELAVEVGHAVDAWWSDGWWEGVVTRIDHCGDDTVQVYFPGECLLMEVCRKDLRISRDWLGDSWINIKAKPEITRTIFFTANNSFNTKLSVSPSIDKVADTVGFGNSCHGDPFSKKCDELAIEDEKHLSCEGFAEDGFCVPDNKPSSGKNTEADNIEIHGCCDDEDKGDEHDKVNNDDDSNKNGDNTGNKDIKVFGTSGLNREHVELMEVAV* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02507 682 ProSiteProfiles BAH domain profile. 166 285 IPR001025 GO:0003682
Lapu6g02507 682 Pfam BAH domain 169 276 IPR001025 GO:0003682
Lapu6g02507 682 MobiDBLite consensus disorder prediction 636 665 - -
Lapu6g02507 682 CDD Tudor_Agenet_AtDUF_rpt1_3 389 449 - -
Lapu6g02507 682 CDD BAH_plant_1 161 290 - -
Lapu6g02507 682 Pfam Agenet domain 392 466 IPR008395 -
Lapu6g02507 682 SMART BAH_4 166 285 IPR001025 GO:0003682
Lapu6g02507 682 SMART agenet_At_2 387 452 IPR014002 -
Lapu6g02507 682 SMART agenet_At_2 473 531 IPR014002 -
Lapu6g02507 682 MobiDBLite consensus disorder prediction 317 331 - -
Lapu6g02507 682 MobiDBLite consensus disorder prediction 636 656 - -
Lapu6g02507 682 MobiDBLite consensus disorder prediction 310 339 - -
Lapu6g02507 682 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 381 597 - -
Lapu6g02507 682 Gene3D - 133 292 IPR043151 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02507 Lapu-Chr6 25008927 25015654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02507 401 529 PHD Transcription Factor Family AT5G58610 30.597 5.51e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02507 - - gmx:100306240 1176