Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02493 ATGGACGAAGGTGAGGGAGGGTACGGTGAGAGCACCGATCCCATAGATCAGTTTCACCGTAACGAAGCTATATCCGCTGTAGCCGATGATGGTTTCTTGGCCGAGGAAGACGACGATTACGAGGATCTTTACAACGACGTAAACGTCGGTGAAGGGTTCCTCCAATCTTTGCGCAAGAACGATGATTCGGGGTTCCGAAACGAAGATGTCGAGGACAAGAAGCCGCTACCGCCGCCGGCGGTTCCGGATACCGCCGGGATTGCGATTCCGGGTGTCGGTGGCGGTGGAGAGGGTGTGGGTGTCGGTGGAAGCAGTGTTGTGGAATCTAGGGTTTCTGGTAGAGTTGACGGGTTTCAGAATCAAGGGTTTAGGGCGAACGATGTGGGTGCCAAAGGTGGGATTAGGGTTGAATTAGGACACCAATCTGGTAAATCTAGTGAAATTGAGGAGCAGGGAGGTAATGATGGTGCTGCAGTGCAGGGGATTGGACAACAACCACATGCTGGAGTTGTTGGGAGCGTGGGAAGTGAGGGCATGGTGAGACAAGGTGGTGGTAGTGGTGGTGGTGGAGGAGGAGGAGGAAATGCTAATAGGGTTGGTGGAAATGGTGTTGGCAACAGTGTGGGTGCTGTTAATAGTGTTAGTAGTGGAGGAGTTGGAGTTGGAGTTGGAGTTGGAGTTGGAGTTGGAGTTGGAGGTGGTGGTGGTGGTGGTGCTGGTTCTGGTGGTACTATATTGTTTGTTGGTGATTTGCATTGGTGGACCACTGATGCCGAACTGGAAACTGAGCTTAGTAAGTACGGGCCTGTTAAGGAGGTGAAGTTTTTCGATGAGAAGGCTAGTGGGAAGTCAAAGGGGTATTGTCAAGTTGAGTTTTTCGACCCTTCTGCTGCTACAACTTGCAAGGAGGGAATGAATGGTCATGTTTTTAATGGGAGGCCATGCGTTGTTGCGTTTGCGTCACCTTTTACAGTTAAGAAAATGGGGGAGGCTCAGATAAACAGGAATCAACAGATGAACCCATCTGCCGTTGCACAACAGGGAAGGAGGGGGCCTTCTGATTCGGGGGCTAAGCCTGGTGGAGGTAATATTTCTACCGGTGGTAATTACCAAGGAGGAGATGGGAATAGAGGTTATGGGAGAGGAGGTAATTGGGGAAGAGGGAATAATCCTGGTATAATGGGTCATGGTGGTGGGAATGGTTTTGGACAGGGTATTGGTGGTACCCCTCCACTGTTGCATCCTCAGTCAATGATGAGTCAGGGTTTTGATCCTGCTTTTGGTGGGCCCATGGGTAGAATGGGTGGCTATGGAGGCTTTCCTGGTGCTCCAACGCCTCCATTTTCTGGGATATTACCTTCATTCCCTGGTGTTGGAGGTGTTGGTTTGCCTGGAGTGGCACCTCATGTTAATCCTGCATTTTTTGGAAGAGGGATGCCAGTTAATGGTATGGGGATGATGCCGACATCAGGCATGGATGGTCCTAATATGGGAATGTGGTCAGATCCGAATATGGGTGGATGGGGTGGTGAAGAGCCAGGTGGTGGGAAGGCTGGAGAGTCAAGTTATGGGGAGGAAGCTGCATCCGACCATCAGTATGGTGAAGTTAGTCATGATAGAGCTGGGTGGCCGATGAGGGAGAAAGATAGAGGTTCAGAAAGGGACTGGTCTGGTTCTTCTGAGAGAAGGTATAGGGATGATAGAGATCAAGGATATGAGAGAGATGCACCCAGAGAGAAAGATATGGGCCATGATCCTGAGTGGTCTGAAAGAAGGCACCGTGATGACAGAGAAACTGGCCGAGAACGATCTCGGGACCGTGACAGGGAGCGATCTCGGGATCGTGACAGGGAGCGTTCTCGTGATCGTGACCGTGACCGCGAAAGGGATCACCGTGAGCGTGACAGGCACAGAGAAGATAGGGACAGATATGCAGATCATCATAGGTATAGAGATGGGGAAGCAGAGCATGATGATGACTGGGAGAGGGGCCGGTCATCAAGGACACACAGCAAATCACGGTTATCACAAGAGGAGGAACACCATTCTAGGCCGAGAGACGCCGATTATGGGAAGAGGAGACGGCTTACTTCTGAATAA 2100 0.5114 MDEGEGGYGESTDPIDQFHRNEAISAVADDGFLAEEDDDYEDLYNDVNVGEGFLQSLRKNDDSGFRNEDVEDKKPLPPPAVPDTAGIAIPGVGGGGEGVGVGGSSVVESRVSGRVDGFQNQGFRANDVGAKGGIRVELGHQSGKSSEIEEQGGNDGAAVQGIGQQPHAGVVGSVGSEGMVRQGGGSGGGGGGGGNANRVGGNGVGNSVGAVNSVSSGGVGVGVGVGVGVGVGGGGGGGAGSGGTILFVGDLHWWTTDAELETELSKYGPVKEVKFFDEKASGKSKGYCQVEFFDPSAATTCKEGMNGHVFNGRPCVVAFASPFTVKKMGEAQINRNQQMNPSAVAQQGRRGPSDSGAKPGGGNISTGGNYQGGDGNRGYGRGGNWGRGNNPGIMGHGGGNGFGQGIGGTPPLLHPQSMMSQGFDPAFGGPMGRMGGYGGFPGAPTPPFSGILPSFPGVGGVGLPGVAPHVNPAFFGRGMPVNGMGMMPTSGMDGPNMGMWSDPNMGGWGGEEPGGGKAGESSYGEEAASDHQYGEVSHDRAGWPMREKDRGSERDWSGSSERRYRDDRDQGYERDAPREKDMGHDPEWSERRHRDDRETGRERSRDRDRERSRDRDRERSRDRDRDRERDHRERDRHREDRDRYADHHRYRDGEAEHDDDWERGRSSRTHSKSRLSQEEEHHSRPRDADYGKRRRLTSE* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02493 699 Gene3D - 238 408 IPR012677 -
Lapu6g02493 699 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 244 322 IPR000504 GO:0003723
Lapu6g02493 699 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 246 315 IPR000504 GO:0003723
Lapu6g02493 699 MobiDBLite consensus disorder prediction 531 699 - -
Lapu6g02493 699 SMART rrm1_1 245 318 IPR000504 GO:0003723
Lapu6g02493 699 CDD RRM_CFIm68_CFIm59 246 319 - -
Lapu6g02493 699 SUPERFAMILY RNA-binding domain, RBD 241 328 IPR035979 GO:0003676
Lapu6g02493 699 MobiDBLite consensus disorder prediction 334 349 - -
Lapu6g02493 699 MobiDBLite consensus disorder prediction 55 81 - -
Lapu6g02493 699 MobiDBLite consensus disorder prediction 61 76 - -
Lapu6g02493 699 MobiDBLite consensus disorder prediction 493 699 - -
Lapu6g02493 699 MobiDBLite consensus disorder prediction 141 198 - -
Lapu6g02493 699 MobiDBLite consensus disorder prediction 334 424 - -
Lapu6g02493 699 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 20 636 IPR034772 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02493 Lapu-Chr6 24836134 24838485 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02493 233 442 Eukaryotic Initiation Factors Gene Family AT2G23350 29.245 3.23e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02493 K14398 - gmx:100782869 920.228
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02493 6 24836134 24838485 Lapu6g02493 6 24836134 24838485 ECH