Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02492 ATGGACGAAGGCGAGGGAGGATACGGTGAGAGCGGGGATCCCATGGATCAGTTTCACCGTAACGAAGCTATATCCGCCGTCGCCGACGATGGTTTCATGGCAGAGGAAGATGACGATTATGAAGATCTTTACAACGACGTCAACGTCGGCGAAGGGTTCCTTCAATCTTTGCGCAAAAATGATGATTCGGGGTTCCGAAGCGACGACGTTGAGGACAAGAAGCCCCCGCCGCCCCCGCCGGTTCCGGATGCCGCCGCCGGAGTTTCGATTCCGGGTGTCGGTGGCGGGGGAGAGGGTGTCGGGGATGGTGGAAGTGGGGTTGTGGAATCTAGAGTTTCAGGGGGAGTTGATGGATTTCAGAATCAAGGGTTTAGAGGGAACGAGGTGGGTGCTAAAGGTGGGATCAGGGTTGAATTGGGGCACCAGTCTGTAAAATCTGGTGGAATTGAGGAGCAGGCTGATAATGATGGTGCTGCAGTTCCGGGGATTGGGCAGCAGCCACATGCTGGGGTTGTGGGGAGTGTGGGAAATGAGGGTTTGGCGAGACAAGGTCAAGGTGGTGGAGGAGGGGGGAGTGCTAACAGGGTTGGTGGAAATGGCGTTGGTAACAGTGTGGGCGCTGTTAATAGTGTTAGTACTGGAGGAGTTGGAGGTGGTGGTTCTGCTGCTGCCGGTGGTACTATATTGTTTGTCGGTGATTTGCATTGGTGGACCACTGATGCTGAGCTGGAAACTGAGCTTAGTAAGTATGGGCCTGTTAAGGAAGTGAAGTTTTTCGATGAGAAGGCTAGTGGGAAGTCAAAGGGGTATTGCCAAGTTGAGTTTTTTGACCCTTCTGCTGCGACAACTTGCAAGGAGGGAATGAATGGTCATGTTTTTAACGGGAGGCCATGTGTTGTTGCGTTTGCGTCACCTTTTACAGTTAAGAAAATGGGGGAGGCTCAGATAAACAGGAATCAGCAGATGAACCCATCTGCAGTTGCGCAACAGGGAAGGAGGGGTCCTTCTGATTCAGGGGCTAAGGCTGGTGGAGGTAATATTTCTTCCGGTGGTAATTACCAAGGGGGAGATGGGAATAGAGGTTATGGGAGAGGAGGTAATTGGGGAAGGGGGAATAATCCTGGTATGGGGAATAGGGGCCCTGTGAATCCAATGAGGAATAGGGGTGGTGGGATGGGTGGTAGAGGTATAATGGGTCATGGTGGTGGGAATGGTTTTGGACAGGGTATTGGTGGTGCCCCTCCACTGTTGCATCCTCAGTCAATGATGAGTCAGGGTTTTGATCCTGCTTTTGGTGGGCCCATGGGTAGAATGGGTGGCTATGGAGGCTTTCCTGGTGCTCCAACGCCTCCATTTTCTGGGATATTACCTTCATTCCCTGGTGTTGGAGGTGTTGGTTTGCCTGGAGTGGCACCTCATGTTAATCCTGCATTTTTTGGAAGAGGGATGCCAGTTAATGGTATGGGGATGATGCCGACATCAGGCATGGATGGTCCTAATATGGGAATGTGGTCAGATCCGAATATGGGTGGATGGGGTGGTGAAGAGCCAGGTGGTGGGAAGGCTGGAGAGTCAAGTTATGGGGAGGAAGCTGCATCCGACCATCAGTATGGTGAAGTGAGTCATGATAGAGCAGGGTGGCCCATGAGGGAGAAAGATAGAGGTTCAGAAAGGGACTGGTCTGGTTCTTCTGAGAGAAGGTATAGGGATGATAGAGATCAAGGATATGAGAGAGAAGCACCTAGAGAGAAAGACATGGGCCATGATCCTGAGTGGTCTGAAAGAAGGCATCGTGATGATAGAGAAACTGGCCGAGAACGATCTCGTGACCGTGATCGGGAGCGATCTCGTGACCGTGAAAGGGATCACCGTGAGCGTGACAGGCACAGGGAAGATAGGGACCGGTATGCCGATCATCATAGGTACAGGGACAGGGAAGCAGAGCATGATGATGAGTGGGAGAGGGGACGATCATCAAGGACTCACAGCAAGTCACGGTTATCACAAGAGGAGGAGCACCATTCAAGGCCAAGGGATTCTGATTATGGGAAGAGGCGAAGGCTTACTTCTGAATAA 2076 0.5197 MDEGEGGYGESGDPMDQFHRNEAISAVADDGFMAEEDDDYEDLYNDVNVGEGFLQSLRKNDDSGFRSDDVEDKKPPPPPPVPDAAAGVSIPGVGGGGEGVGDGGSGVVESRVSGGVDGFQNQGFRGNEVGAKGGIRVELGHQSVKSGGIEEQADNDGAAVPGIGQQPHAGVVGSVGNEGLARQGQGGGGGGSANRVGGNGVGNSVGAVNSVSTGGVGGGGSAAAGGTILFVGDLHWWTTDAELETELSKYGPVKEVKFFDEKASGKSKGYCQVEFFDPSAATTCKEGMNGHVFNGRPCVVAFASPFTVKKMGEAQINRNQQMNPSAVAQQGRRGPSDSGAKAGGGNISSGGNYQGGDGNRGYGRGGNWGRGNNPGMGNRGPVNPMRNRGGGMGGRGIMGHGGGNGFGQGIGGAPPLLHPQSMMSQGFDPAFGGPMGRMGGYGGFPGAPTPPFSGILPSFPGVGGVGLPGVAPHVNPAFFGRGMPVNGMGMMPTSGMDGPNMGMWSDPNMGGWGGEEPGGGKAGESSYGEEAASDHQYGEVSHDRAGWPMREKDRGSERDWSGSSERRYRDDRDQGYEREAPREKDMGHDPEWSERRHRDDRETGRERSRDRDRERSRDRERDHRERDRHREDRDRYADHHRYRDREAEHDDEWERGRSSRTHSKSRLSQEEEHHSRPRDSDYGKRRRLTSE* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02492 691 MobiDBLite consensus disorder prediction 535 691 - -
Lapu6g02492 691 MobiDBLite consensus disorder prediction 317 332 - -
Lapu6g02492 691 MobiDBLite consensus disorder prediction 497 691 - -
Lapu6g02492 691 SUPERFAMILY RNA-binding domain, RBD 214 312 IPR035979 GO:0003676
Lapu6g02492 691 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 227 305 IPR000504 GO:0003723
Lapu6g02492 691 MobiDBLite consensus disorder prediction 152 197 - -
Lapu6g02492 691 MobiDBLite consensus disorder prediction 61 76 - -
Lapu6g02492 691 SMART rrm1_1 228 301 IPR000504 GO:0003723
Lapu6g02492 691 MobiDBLite consensus disorder prediction 1 127 - -
Lapu6g02492 691 MobiDBLite consensus disorder prediction 31 45 - -
Lapu6g02492 691 MobiDBLite consensus disorder prediction 317 392 - -
Lapu6g02492 691 Gene3D - 212 313 IPR012677 -
Lapu6g02492 691 CDD RRM_CFIm68_CFIm59 229 302 - -
Lapu6g02492 691 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 20 625 IPR034772 -
Lapu6g02492 691 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 229 298 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02492 Lapu-Chr6 24824361 24831745 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02492 206 303 Eukaryotic Initiation Factors Gene Family AT4G34110 29.000 8.29e-06 47.4