Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02484 ATGCCAATTACAAATGTGACAAAAATCATGAGAAAATTTCTTCCAAATAATGCAAAAGTCTCAGATGGGGCCAAGGAGATGATTCAACAAAGTGCTACAAACTACATAACCTTTGTAACCAGAAAAGCCAAGGAGAAATGCCAAAGTGAGTATAGAAAGATTATGAATGCAGATGACTTGTTATGGGCCATTCAAAATGTGGGCTTTGATGACTATCTTGGGCCTCTCAGTACTTTTCTCCAACGATGTCGCAACATTGAAGGATTCGGTAACGGGCCTGCTTTTGGGCCTGAGCTTAACCCTGTGGAGATGCCTCACCCTCCATTACCACCACCACCACCACCACCTCCACCACCACCACCACCACCACCACCAGCAGCAGTTTGTTCATCCGGGTTAGAGTTTTCCATGCACCAAACCACAAATCCTGAAATGTTTGACCCAAATGGTGTGAGTGGTGGTTACTTAGATGGTGTTGGTTGCTCAAATAATGCTTTTATCAACTTTGATCCTTTCTCTCTCTTCCAACATGATCATCTGTGA 543 0.4365 MPITNVTKIMRKFLPNNAKVSDGAKEMIQQSATNYITFVTRKAKEKCQSEYRKIMNADDLLWAIQNVGFDDYLGPLSTFLQRCRNIEGFGNGPAFGPELNPVEMPHPPLPPPPPPPPPPPPPPPPAAVCSSGLEFSMHQTTNPEMFDPNGVSGGYLDGVGCSNNAFINFDPFSLFQHDHL* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02484 180 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1 64 IPR003958 -
Lapu6g02484 180 MobiDBLite consensus disorder prediction 94 127 - -
Lapu6g02484 180 Gene3D Histone, subunit A 1 89 IPR009072 GO:0046982
Lapu6g02484 180 MobiDBLite consensus disorder prediction 100 127 - -
Lapu6g02484 180 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 89 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lapu6g02484 180 PRINTS CCAAT-binding transcription factor subunit A signature 47 65 - -
Lapu6g02484 180 PRINTS CCAAT-binding transcription factor subunit A signature 28 46 - -
Lapu6g02484 180 PRINTS CCAAT-binding transcription factor subunit A signature 66 84 - -
Lapu6g02484 180 SUPERFAMILY Histone-fold 1 94 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02484 Lapu-Chr6 24741600 24742166 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02484 1 99 CCAAT-HAP3 Transcription Factor Family AT5G47640 50.980 9.63e-32 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lapu6g02484 CBFD_NFYB_HMF 3.1e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02484 K08065 - pda:103724115 116.701