Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02464 ATGTCTTACGTTCCTTCTCAACACAACAACATTCACGAGGTTCCTATTGGTAGTGAAGTTTCCATTCCTTCGTGCCAAACATGTTCTCCTTTTCCTGTTGCTGCAATGATGGAAATATTGTCTAAAGAAGATGACTTTGATTGGCGTGAAGTGGTGGATTATGCAAACCACTTAGAATCACAAATTATGAACAATTCAAATCAAATTGTTTCATCTACTCACTCCAACAACTCACGTGTCACTGCTCGTTGTAAAAAATACGAGCGTTGGACTCAAGAAGAACACAAGTTATTTATCCTTGGACTTGCAAAACATCGTCAAGGAAACTGGAAAGAAATTTCAAGAGATTTTGTTCCCACTAAAACTCCAAGTCAAATTGCAAGTCATAGTCAAAATGGTTTACTTGATCAAGAAACACATTTGAAGATAATGTTTAAAGATATAGTTAGAGACATTCAAGAACTTTTGCTTTTGTTAGTGATTAAGGTCTTCTCTTTTAAGCCTCCTACTTCTATCATTCAATTTCACACTCCTAGTGTTGTACCTTTTCAGGAGACATTATTCTTAAACAATATCCAAATATCTCATACAAAGACATTCAGGGACTATACCATTGTTAGTGATCAAGGTCTTGTCCCTGTGCTTCCTACCTCTACCACTCAGTTTCATTCCACTCATGTTTCTCTTTATGTAGAGGCATTTGGGGACTATACTCTTACAGGTGATCAAGTTCTTGTCCTTATGCTTCCTATCCCTACCATTCAACTTCATTTCCCTTATGGTTTATCTCATGATACATACATTATTCATAGACAGTATTCAAAGATCTCATGCAGAGTCATTTGGTGA 849 0.364 MSYVPSQHNNIHEVPIGSEVSIPSCQTCSPFPVAAMMEILSKEDDFDWREVVDYANHLESQIMNNSNQIVSSTHSNNSRVTARCKKYERWTQEEHKLFILGLAKHRQGNWKEISRDFVPTKTPSQIASHSQNGLLDQETHLKIMFKDIVRDIQELLLLLVIKVFSFKPPTSIIQFHTPSVVPFQETLFLNNIQISHTKTFRDYTIVSDQGLVPVLPTSTTQFHSTHVSLYVEAFGDYTLTGDQVLVLMLPIPTIQLHFPYGLSHDTYIIHRQYSKISCRVIW* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02464 282 Pfam Myb-like DNA-binding domain 89 132 IPR001005 -
Lapu6g02464 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 89 138 IPR017930 -
Lapu6g02464 282 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 49 131 IPR043363 -
Lapu6g02464 282 CDD SANT 89 129 IPR001005 -
Lapu6g02464 282 SUPERFAMILY Homeodomain-like 84 135 IPR009057 -
Lapu6g02464 282 Gene3D - 87 133 - -
Lapu6g02464 282 ProSiteProfiles SANT domain profile. 88 126 IPR017884 -
Lapu6g02464 282 SMART sant 86 136 IPR001005 -
Lapu6g02464 282 ProSiteProfiles Myb-like domain profile. 89 134 IPR001005 -
Lapu6g02464 282 NCBIfam myb-like DNA-binding domain, SHAQKYF class 85 131 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02464 Lapu-Chr6 24573414 24578483 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu6g02464 Myb_DNA-binding 5.5e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02464 - - vra:106754349 82.8037