Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02460 ATGGATGCTAAGTCGGCTGTAGAATTAATGGAGTCTTCCAAGGAGGTTCATTTTTCTGGCTTTCACATGGATGGTTTTGAGCAAAGAAAGGCTAGCATAGAACAACCAACAACCTCGGAAACTGACATGTATAAACAACCTTTTGTCATAGGTGTTGCTGGGGGTGCAGCATCTGGCAAGACAGCAGTTTGTGATATGATTATTCAACAGCTTCATGATCAACGAGTAGTACTTGTTAATCAGGATTCCTTTTACAACAACCTGTCCGAGGAGGAACTTACACGAGTAAATGATTACAACTTTGACCATCCTGATGCTTTTGATACTGAGCAATTGCTTCGCGTTATGGACAAGTTAAAGCATGGTGAAGCAGTAGATATTCCGAAGTATGATTTTAAGAGTTACAAGAGTGATGTGTTAAGAAGGGTGAACCCTTCAGATGTCATAATTTTAGAGGGCATCCTTGTTTTCCATGATCCGCGTGTTCGGGAGTTGATGAACATGAAGATATTTGTTGACACAGATGCTGATGTTCGATTGGCAAGAAGGATTAGGCGTGATACTAACGAGAAGGATCGGGATATTGGAACAGTTCTTGATCAGTATTCAAAATTTGTGAAGCCAGCTTTTGATGACTTTATTCTTCCAACAAAGAAATATGCTGATATAATTATACCCCGTGGAGGAGATAATCATGTGGCCATTGATTTGATTGTACAGCATATCCGTACAAAGCTAGGTCAGCATGACCTGTGTAAAATATATCCCAATTTATATGTCATTCAATCAACTTTTCAGATACGGGGTATGCATACACTGATACGTGATGCTCAAACAACAAAGCATGATTTTATATTTTACTCTGATCGTTTGATTCGATTGGTTGTAGAACATGGTTTGGGGCATCTGCCATTTACAGAAAAACAAGTAGTCACTCCCACTGGTTCTGTATACACTGGTGTTGATTTTTGTAAAAGGTTGTGTGGTGTCTCGGTTATCAGAAGTGGGGAGAGCATGGAGAATGCTTTGAGAGCATGCTGCAAAGGTATCAAGATTGGGAAAATTCTAATTCACAGGGAAGGTGACAATGGTCAGCAGCTAATATATGAAAAGTTGCCAAATGATATCTCAGACAGACATGTGTTACTGTTGGACCCTATACTTGGCACAGGTAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAGAAAAGGTGTACCTGAATCCAACATTATATTTCTCAATCTCATATCTGCACCTAAAGGTGTGCATGTTGTGTGCAAAAGTTTTCCCAGAATAAAGATAGTAACATCTGAGATTGAAATCGGTTTGAATGAAGATTTCCGTGTCATACCTGGTATGGGCGAGTTTGGAGATAGGTACTTTGGAACAGATGATGATGATGATGAGCAAATGGTTTCTTCACAGTAG 1431 0.3948 MDAKSAVELMESSKEVHFSGFHMDGFEQRKASIEQPTTSETDMYKQPFVIGVAGGAASGKTAVCDMIIQQLHDQRVVLVNQDSFYNNLSEEELTRVNDYNFDHPDAFDTEQLLRVMDKLKHGEAVDIPKYDFKSYKSDVLRRVNPSDVIILEGILVFHDPRVRELMNMKIFVDTDADVRLARRIRRDTNEKDRDIGTVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDAQTTKHDFIFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLLIRKGVPESNIIFLNLISAPKGVHVVCKSFPRIKIVTSEIEIGLNEDFRVIPGMGEFGDRYFGTDDDDDEQMVSSQ* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02460 476 Pfam Phosphoribulokinase / Uridine kinase family 49 233 IPR006083 GO:0005524|GO:0016301
Lapu6g02460 476 FunFam Uridine kinase 249 464 - -
Lapu6g02460 476 NCBIfam uridine kinase 45 245 IPR000764 -
Lapu6g02460 476 Gene3D - 249 464 IPR029057 -
Lapu6g02460 476 CDD UMPK 49 245 IPR000764 -
Lapu6g02460 476 Pfam Uracil phosphoribosyltransferase 263 464 - -
Lapu6g02460 476 PANTHER URIDINE KINASE 36 374 - -
Lapu6g02460 476 FunFam Uridine kinase 44 248 - -
Lapu6g02460 476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 238 IPR027417 -
Lapu6g02460 476 CDD PRTases_typeI 322 437 IPR000836 -
Lapu6g02460 476 PRINTS Uridine kinase signature 177 187 - -
Lapu6g02460 476 PRINTS Uridine kinase signature 213 226 - -
Lapu6g02460 476 PRINTS Uridine kinase signature 122 137 - -
Lapu6g02460 476 PRINTS Uridine kinase signature 77 88 - -
Lapu6g02460 476 PRINTS Uridine kinase signature 47 64 - -
Lapu6g02460 476 PRINTS Uridine kinase signature 191 202 - -
Lapu6g02460 476 Gene3D - 43 248 IPR027417 -
Lapu6g02460 476 SUPERFAMILY PRTase-like 248 465 IPR029057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02460 Lapu-Chr6 24490786 24498689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02460 1 467 PRT Gene Family AT4G26510 83.156 0.0 818
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02460 K00876 - gmx:100792258 905.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02460 6 24490786 24498689 Lapu6g02460 6 24490786 24498689 ECH
Lapu6g02460 6 24490786 24498689 Lapu6g02460 6 24490786 24498689 PCT