Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02451 ATGAAGATCACTGTCATGACTGCTGATGAGCAAATTCTGACGTTGGATGTGGATCCCCAAGAATCTGTGGAAAACGTCAAAGCATTGCTCGAGGTTGAGACTAGCGTGCCTCTTCAACAACAACAGCTTCTGTTCAATGGGAAGGAGGTGAGCAATTCTGAGAAGTTGAGTGCCCTTGGTGTTAAGGATGATGATTTGCTGATGATGGTCTCTGGTTCTGGGGCCGCCGCTTCTAGTGGGTCTACCAATGATTTGAGTTTGAATACCGATGGTTCGGCTGTCAACCCTAGTGCTTTCCAGCAGCACATAAGACGAGATTCTAATTTGATGGGTCAGCTCTTTCAGAGTGATCCAGAGTTGGCACAAGCTATTTTAGGGAACGATCTGAATAGATTGCAAGAAGTTCTGCGAATGCGTCATAACCAAAGAGATGAATTAAAGCGTCAGAAAGCAGAAGAACTTGCTCTTCATTATGCTGATCCTTTTGATGTTGAAGCACAAAAGAAGATTGAAGCTGCCATTCGCCAGAGAGGGATTGATGAAAATTGGGCAGCTGCATTAGAACATAATCCCGAAGCTTTTGCTAGAGTGGTCATGTTGTATGTTGATATGGAGGTTAATGGTGTACCATTGAAGGCATTTGTTGATAGTGGAGCTCAGTCTACGATTATATCAAAAAGCTGTGCTGAGCGTTGTGGATTGCTGAGACTTCTAGATCAGCGATACAGAGGGATTGCTCATGGAGTTGGCCAGTCAGAAATATTGGGTCGTATACATGTAGCTCCAATCAAGGTATCAGCAGATCTTGGGGATAATTTTGTGTTGTACCATTCTCAGTTGCACTCTTTGATATCATTGCTTTCAGTAGTTACTCTAAGCTGCTATTCTTATAGCTTTGGATATTTTCTGCAGTGTATAATTGATTTGAAAGAAAGTGTTTTGCGAGTTGGTGGGGGAGAAGTTTCTGTGCCATTTTTGCAAGAGAAAGACATACCATCTCGGTTTTTAGATGAGGAGAAGTATGCTAAGGAAGCTTCTGGCTCTAGTGGTCAAATTACATCAGGAAGCAATAATCCATCAACTGGAGGCCACCCTTCTGGAGGAGCTTCTACTGACAGGGCTAAGGATTCTGAATTTGAAGCCAAAGTTGCAAAGCTTGTTGAGTTGGGATTTGATAGAAATGCAGTTGTACAAGCTCTTCAATTATGCAATGGCAATGAGGAACAGGCTGCTAGCTTTCTTTTCGGGGGCTAG 1254 0.4306 MKITVMTADEQILTLDVDPQESVENVKALLEVETSVPLQQQQLLFNGKEVSNSEKLSALGVKDDDLLMMVSGSGAAASSGSTNDLSLNTDGSAVNPSAFQQHIRRDSNLMGQLFQSDPELAQAILGNDLNRLQEVLRMRHNQRDELKRQKAEELALHYADPFDVEAQKKIEAAIRQRGIDENWAAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLLDQRYRGIAHGVGQSEILGRIHVAPIKVSADLGDNFVLYHSQLHSLISLLSVVTLSCYSYSFGYFLQCIIDLKESVLRVGGGEVSVPFLQEKDIPSRFLDEEKYAKEASGSSGQITSGSNNPSTGGHPSGGASTDRAKDSEFEAKVAKLVELGFDRNAVVQALQLCNGNEEQAASFLFGG* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02451 417 ProSiteProfiles Ubiquitin domain profile. 1 70 IPR000626 GO:0005515
Lapu6g02451 417 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 374 417 IPR015940 -
Lapu6g02451 417 CDD UBA_scDdi1_like 380 415 - -
Lapu6g02451 417 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
Lapu6g02451 417 PRINTS Ubiquitin signature 11 31 IPR019956 -
Lapu6g02451 417 PRINTS Ubiquitin signature 32 52 IPR019956 -
Lapu6g02451 417 Gene3D Acid Proteases 178 333 IPR021109 -
Lapu6g02451 417 Gene3D - 380 415 - -
Lapu6g02451 417 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Lapu6g02451 417 SUPERFAMILY Acid proteases 185 264 IPR021109 -
Lapu6g02451 417 Coils Coil 129 152 - -
Lapu6g02451 417 MobiDBLite consensus disorder prediction 345 374 - -
Lapu6g02451 417 SMART ubq_7 1 72 IPR000626 GO:0005515
Lapu6g02451 417 CDD RP_DDI 184 316 IPR019103 GO:0004190|GO:0006508
Lapu6g02451 417 Pfam UBA/TS-N domain 380 414 IPR015940 -
Lapu6g02451 417 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 414 - -
Lapu6g02451 417 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Lapu6g02451 417 Gene3D - 1 84 - -
Lapu6g02451 417 Pfam Aspartyl protease 177 267 IPR019103 GO:0004190|GO:0006508
Lapu6g02451 417 SMART uba_6 379 416 IPR015940 -
Lapu6g02451 417 MobiDBLite consensus disorder prediction 346 367 - -
Lapu6g02451 417 SUPERFAMILY UBA-like 357 417 IPR009060 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02451 1 70 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 3.62e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02451 K11885 - gmx:100779464 662.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02451 6 24426727 24434834 Lapu6g02451 6 24426727 24434834 ECH