Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02446 ATGGGGAGCGACAGCGAAGCAGAGAAATCGGTGCAGAAAGAGAAGGAGAAGAAGAAGATGCAGGCCCTCGCTCCCATCGCCAAACCACTTGCCGGCAAGAAGCTTTGCAAGCGTACCCTAAAACTTGTTCGCAGAGCCGCTGAACACAAATGCTTAAAGAGAGGAGTAAAGGAGGTCGTTAAAAGCATTAGGAGAGGTCACAAAGGATTGTGTGTTATCGCTGGGAATATTTCACCGATTGATGTTATCACTCATGTTCCTATTCTCTGTGAAGAGTCTGACATTCCATACATATATGTCCCATCTAAAGAAGACCTTGCAGGTGCAGGAGCAACAAAGAGGCCTACTTGCTGTGTTTTGGTGCAGACTAAACCTGCAAAGGGTGAGTTAGAGAAAGGGGAACAGGAGAAACTAAAGTCTGATTTTGATCAAGTTGTATCGGAAGTTACTGAGGTTACAGCTTCACTTTTTTGA 474 0.4515 MGSDSEAEKSVQKEKEKKKMQALAPIAKPLAGKKLCKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVPSKEDLAGAGATKRPTCCVLVQTKPAKGELEKGEQEKLKSDFDQVVSEVTEVTASLF* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02446 157 Gene3D - 9 152 IPR029064 -
Lapu6g02446 157 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 9 147 - -
Lapu6g02446 157 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 40 124 IPR004038 -
Lapu6g02446 157 MobiDBLite consensus disorder prediction 1 22 - -
Lapu6g02446 157 SUPERFAMILY L30e-like 19 127 IPR029064 -
Lapu6g02446 157 PRINTS High mobility group-like nuclear protein signature 55 65 IPR002415 GO:0003723|GO:0005730
Lapu6g02446 157 PRINTS High mobility group-like nuclear protein signature 38 53 IPR002415 GO:0003723|GO:0005730
Lapu6g02446 157 PRINTS High mobility group-like nuclear protein signature 25 38 IPR002415 GO:0003723|GO:0005730
Lapu6g02446 157 PRINTS High mobility group-like nuclear protein signature 99 111 IPR002415 GO:0003723|GO:0005730
Lapu6g02446 157 FunFam H/ACA ribonucleoprotein complex subunit NHP2 20 152 - -
Lapu6g02446 157 PRINTS Ribosomal protein L7A/RS6 family signature 71 84 IPR018492 -
Lapu6g02446 157 PRINTS Ribosomal protein L7A/RS6 family signature 87 97 IPR018492 -
Lapu6g02446 157 PRINTS Ribosomal protein L7A/RS6 family signature 52 66 IPR018492 -
Lapu6g02446 157 PRINTS Ribosomal protein L7A/RS6 family signature 97 111 IPR018492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02446 Lapu-Chr6 24368804 24369929 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02446 52 148 Cytoplasmic Ribosomal Protein Gene Family AT2G47610 28.571 9.28e-07 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02446 K11129 - gmx:100305515 274.633