Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02434 ATGCAGTCCAAGTCTGAAACTGCAAATCGACTGAGGCCAGATCCTCATTCCTTTCAACCAGGTAGTGTTTATTCCGAGCCTTGGTGGCGTGGTATTGGTTACAATCCCTTGGCCCAAACAATGGCCGGGGCAAATGCGTCCAATTCTTCATCTCTTGAATGCCCTAATGGTGACTCTGAATCCAATGAAGAAGGCCAGTCTTTGTCCAATAGCGGGATGAATGAGGAAGATGATGATGCCACTAAGGATTCGCAGCCTGCTGCTCCTAGCGAACCAGTAAATTATGGGCCAGAACAGCAAGGGATGCAGCATACTGCGTCTTCTGCTCCATCAATGCGTGAAGAATGCCTTACTCAGACACCGCAACTGGAACTTGTTGGTCATTCAATTGCATGTGCTACAAATCCATATCAAGATCCGTATTATGGGGGCATGATGGCAGCTTATGGTCACCAGCAGTTGGGATACCCTCCTTTTATAGGAATGCCTCATGCCAGAATGCCTTTGCCCCTTGAGATGGCTCAAGAGCCTGTATATGTGAATGCCAAACAGTACCAAGGAATTCTGAGGCGAAGACAAGCCCGTGCTAAAGCAGAACTTGAAAGGAAGCTAATAAAATCTAGAAAGGTCAAGATGCTTGTGCATCAGGTTCTGATAATGCCACTGTCTTGTTTGATCTTTTCTGGATCACTATTGGGCTATGCTAACATCTGTTTCTCGCAGCCATATCTTCACGAGTCTCGGCACCAGCATGCTATGAGAAGGGCCAGGGGTACCGGAGGACGCTTTGCAAAGAAATCTGGTGCTGAGGGCTCAAACAACTCAGGCAAGGAAAAGGATAATGGGACCGATTCTGTTCTATCATCACAATCTATTAGTTCATCTGGTTCTGAACCTTTGCATTCTGACTCTGCGGAAACCTGGAATTCTCCTAACATGCAACAAGATGCAAGAGCAGCGAAAGTACAGAACAGGTTCGAAGCACCTGGTTACCAAAATGGCAGTGGCTCTTACCATAACCATCACGGTTTGCAATCTTCGGTGTATCATTCAACCTCAGGTGAAAGAGTGCGGGAAGGGGACTGTTCAGGTCAGCAACTAAACCACAATTGA 1113 0.469 MQSKSETANRLRPDPHSFQPGSVYSEPWWRGIGYNPLAQTMAGANASNSSSLECPNGDSESNEEGQSLSNSGMNEEDDDATKDSQPAAPSEPVNYGPEQQGMQHTASSAPSMREECLTQTPQLELVGHSIACATNPYQDPYYGGMMAAYGHQQLGYPPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKVKMLVHQVLIMPLSCLIFSGSLLGYANICFSQPYLHESRHQHAMRRARGTGGRFAKKSGAEGSNNSGKEKDNGTDSVLSSQSISSSGSEPLHSDSAETWNSPNMQQDARAAKVQNRFEAPGYQNGSGSYHNHHGLQSSVYHSTSGERVREGDCSGQQLNHN* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02434 370 ProSitePatterns NF-YA/HAP2 subunit signature. 179 199 IPR018362 GO:0003677|GO:0016602
Lapu6g02434 370 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 15 319 IPR001289 GO:0003700|GO:0006355
Lapu6g02434 370 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 263 IPR001289 GO:0003700|GO:0006355
Lapu6g02434 370 Gene3D - 174 267 - -
Lapu6g02434 370 MobiDBLite consensus disorder prediction 250 370 - -
Lapu6g02434 370 MobiDBLite consensus disorder prediction 44 74 - -
Lapu6g02434 370 SMART cbf3 173 266 IPR001289 GO:0003700|GO:0006355
Lapu6g02434 370 MobiDBLite consensus disorder prediction 268 319 - -
Lapu6g02434 370 ProSiteProfiles NF-YA/HAP2 family profile. 174 266 IPR001289 GO:0003700|GO:0006355
Lapu6g02434 370 MobiDBLite consensus disorder prediction 96 117 - -
Lapu6g02434 370 MobiDBLite consensus disorder prediction 328 353 - -
Lapu6g02434 370 MobiDBLite consensus disorder prediction 1 30 - -
Lapu6g02434 370 MobiDBLite consensus disorder prediction 44 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02434 Lapu-Chr6 24225555 24229740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02434 16 310 CCAAT-HAP2 Transcription Factor Family AT5G12840 48.658 6.52e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lapu6g02434 CBFB_NFYA 4.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02434 K08064 - gmx:100808378 629.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02434 6 24225555 24229740 Lapu6g02434 6 24225555 24229740 ECH
Lapu6g02434 6 24225555 24229740 Lapu6g02434 6 24225555 24229740 PCT