Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02430 ATGTCTAAGATGGTAAGTAACAGCAGTGCAGTGCATGATGATGATGATAAAAATGAGATAATAAATGTAGCTGAGTTCGAGAAATGGCTGGACTCAGTCTTTGTAGATGACGAAATCTTCCATCATTTATCAACTACGCCTATCTCACAGGATGATGTTGACAGCAGGGTTCTCAATCCTAATGAATTATCTCATCAAGAGACATCATCTCAATGTAATATTCAAAGATCGTGTGAGGTATTCAATAACTATACTGCTATGGGTGATGAAGGTCTTGTTCCTAACCCTAGCACTCAACTTCATTTACCTCATGCTTTTGCTTCCACTCATAGTCCTACTCCTCTCAATGTTCTTCCCACTACTCATGTTTCTACCATATCTCCAAACACCACATTATCTACACATGTCCATTCTGGTTTGGTTCAAACATTCAACCATCCAAATCGTGTAGCATCTCGTGAATTAAAGTCACATCGCAAACAATATGAACGTTGGACAGAAGAAGAACACAGGTTATTTCTTGTTGGACTTAAAATGTGTGGTGAGGGAAATTGGAAAGCCATTTCAAAATGGTATATTCCATCCAAAACACACACTCAGATCGCAAGTCACGCTCAGAAGTATATGCTTCATCAAAAAGTTTCAAAGAAAGATAAGAAAAGAAAAAGTATCCACGATATAACCCTAGAGGACATTAACAGAATTGTTCTTCCAAGAAACATTAATCAAGAGCAAGAGTTTCCTCTTATTCCAAATTCTACAATACAACAAGAAATGCAAGCATCACAACATGTTCCGGGCAACATTGATCAAGAACAAAGGCTTCCTCTTGTTCCAAATTTTACAATACAACAAGAAATGCAAGCATCACAACATGTTCCGGGCAACATTGATCAAGAACAAAGGCTTCCTTTTGTTCCAAATTTTACAATACAACAACAAATGCAAGCATCACAATGTGTTCCGGGCAACATTAATCAACAACAAGGACTTCCTCTTCTTCCAAATTTTACAATACAACAACAAATGCAACCATTACAACATAACCACAACCACTTATGTAACACACATCATGAAATTGGTGGTTGCTCTTCACAAGGGAATTTTTCAAATGGAACAAATATATATCATTATTGA 1137 0.3676 MSKMVSNSSAVHDDDDKNEIINVAEFEKWLDSVFVDDEIFHHLSTTPISQDDVDSRVLNPNELSHQETSSQCNIQRSCEVFNNYTAMGDEGLVPNPSTQLHLPHAFASTHSPTPLNVLPTTHVSTISPNTTLSTHVHSGLVQTFNHPNRVASRELKSHRKQYERWTEEEHRLFLVGLKMCGEGNWKAISKWYIPSKTHTQIASHAQKYMLHQKVSKKDKKRKSIHDITLEDINRIVLPRNINQEQEFPLIPNSTIQQEMQASQHVPGNIDQEQRLPLVPNFTIQQEMQASQHVPGNIDQEQRLPFVPNFTIQQQMQASQCVPGNINQQQGLPLLPNFTIQQQMQPLQHNHNHLCNTHHEIGGCSSQGNFSNGTNIYHY* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02430 378 ProSiteProfiles Myb-like domain profile. 157 209 IPR001005 -
Lapu6g02430 378 Pfam Myb-like DNA-binding domain 164 208 IPR001005 -
Lapu6g02430 378 SMART sant 161 211 IPR001005 -
Lapu6g02430 378 CDD SANT 164 209 IPR001005 -
Lapu6g02430 378 Gene3D - 164 213 - -
Lapu6g02430 378 Coils Coil 148 168 - -
Lapu6g02430 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 157 213 IPR017930 -
Lapu6g02430 378 NCBIfam myb-like DNA-binding domain, SHAQKYF class 160 212 IPR006447 GO:0003677
Lapu6g02430 378 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 91 322 IPR043363 -
Lapu6g02430 378 SUPERFAMILY Homeodomain-like 158 213 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02430 Lapu-Chr6 24162866 24166257 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu6g02430 Myb_DNA-binding 6.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02430 - - pvu:PHAVU_008G085600g 173.711